BO28839.complete Sequence
424 bp assembled on 2011-08-24
GenBank Submission: KX798701
> BO28839.complete
GAAGTTATCAGTCGACATGAGTAAACCTGGCAGTGCTCCTCCGCAGTTCA
CCTATGTGCCGCCCCCTTCGGCCCCGCCCTCTTACCAGGAGGCGGTGGGC
GGAGTGAAGCCGGTGGGTCCATATACGCCCGTGGTGGCGCCCGCAACCAC
GGCAAATACCACGATTGTGACCACGGTTGTGCCCATTAGCCGCACTTCGA
CGCACATGATCTGTCCATCGTGCCATGCCGAGATCGAGACGACTACGCGC
ACCGAGCCGGGAATGATTGCCTACTTGTCCGGATTTTTGATTGCCCTATT
TGGTTGCTGGCTGGGATGCTGCCTAATACCTTGCTGCATCGACGACTGCA
TGGATGTGCATCACTCGTGCCCCAACTGCCGCGCATATTTGGGGCGATAC
CGTCGAGCAAGCTTTCTAGACCAT
BO28839.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:03:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32280-RD | 393 | CG32280-PD | 1..390 | 17..406 | 1950 | 100 | Plus |
CG32280-RC | 393 | CG32280-PC | 1..390 | 17..406 | 1950 | 100 | Plus |
CG32280-RB | 393 | CG32280-PB | 1..390 | 17..406 | 1950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:03:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32280-RD | 1279 | CG32280-RD | 245..636 | 15..406 | 1960 | 100 | Plus |
CG32280-RC | 1440 | CG32280-RC | 406..797 | 15..406 | 1960 | 100 | Plus |
CG32280-RB | 1144 | CG32280-RB | 110..501 | 15..406 | 1960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:03:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3167977..3168265 | 15..303 | 1445 | 100 | Plus |
3L | 28110227 | 3L | 3168334..3168437 | 303..406 | 520 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:03:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc4-element | 2791 | Doc4-element DOC4 2791bp | 2582..2683 | 378..275 | 118 | 61 | Minus |
BO28839.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:09 Download gff for
BO28839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32280-RC | 408..797 | 17..408 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:42 Download gff for
BO28839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32280-RA | 79..468 | 17..408 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:53 Download gff for
BO28839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32280-RB | 112..501 | 17..408 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:53 Download gff for
BO28839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3167979..3168265 | 17..303 | 100 | -> | Plus |
3L | 3168335..3168437 | 304..408 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:42 Download gff for
BO28839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3167979..3168265 | 17..303 | 100 | -> | Plus |
arm_3L | 3168335..3168437 | 304..408 | 98 | | Plus |
BO28839.pep Sequence
Translation from 16 to 424
> BO28839.pep
MSKPGSAPPQFTYVPPPSAPPSYQEAVGGVKPVGPYTPVVAPATTANTTI
VTTVVPISRTSTHMICPSCHAEIETTTRTEPGMIAYLSGFLIALFGCWLG
CCLIPCCIDDCMDVHHSCPNCRAYLGRYRRASFLDH
BO28839.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32280-PD | 130 | CG32280-PD | 1..130 | 1..130 | 728 | 100 | Plus |
CG32280-PC | 130 | CG32280-PC | 1..130 | 1..130 | 728 | 100 | Plus |
CG32280-PB | 130 | CG32280-PB | 1..130 | 1..130 | 728 | 100 | Plus |
CG32280-PA | 130 | CG32280-PA | 1..130 | 1..130 | 728 | 100 | Plus |
CG13510-PC | 129 | CG13510-PC | 6..127 | 15..128 | 217 | 36.6 | Plus |