BO28855.complete Sequence
1861 bp assembled on 2011-09-19
GenBank Submission: KX794542
> BO28855.complete
GAAGTTATCAGTCGACATGGGCCTGCTGCTGCTTCTGGTGCTGATAGCGG
GCATTGGCTGCGCAACTGCAGCAGCCAACATTGACCTGGAGGCCAAGACG
TTTGTGAATCAATCGAGCGATCGCTACTACAGGTTCTATAATGAGATTGC
CGCCGAAACGTATTCGGCCAACAACGAAGAGGACTTCGATGCCCTTTTCT
CCAAACTAAACAATGTGAAGCGGATTGCCGAGGAGCTGGTGAGCATCTCC
CGGCAGGCTGCGACCTACGATCTGGACAGGATTCGCAGCCCGCAGACGAA
GATGGCCCTCCAGGAGCTGCGCACTGCGGGTGACTTGTTCGTCCTGGGCG
ACGACTATTTCTCCTCCGTACAGATGAACTTGGCTGCGCTGCAAACACTT
TCCACGGACAAGGACATCGAGCCGTATCTTGGTGGGGCCAATATGCCCAA
CGAGGACGACAGTCCGCTGGCCTATTTCCCAGACATCCAGAAGATCGTGC
AGAGCAGCAAGGATGCCGACGAGCTGAAGTACTATTGGGAGGCCTGGCGG
GATAAGAACCAGCTGTGGGCCTCCCTCAACTTCTACACCATAGTGCAGTC
TTACCAGAGGGCCGCCAAGATCCTGGAGGTGCCGGTGCACAAACTGTGGT
ACCGATACGACAGCCAAGAGATGCTGCAGCAGATGGAGCAGGCGATGACG
GAGCTGCGCCCCGCATACCAGCAGCTCCACGCCTTTGTCCGCCAGGAGCT
GCATAAGAAGTACGGCTCCGATGTGGTCAATCTCAATGGACCGATACCGG
ATCACCTGTTCCAGCAGGTTCTCGAACAGGCCTGGGCCAGTGGCAGCATC
CTGGAGGATTACTACCCGCGTGCCCAGTTGCCGGAGTTCGATGAGTACGT
TAGTCACTTGACCGCCAAGACCATGGTGAACGAGTCCGAAAACTTCTACA
CTTCGCTGGGCTTCGAGCCTCTGTCCGCCGAGTTCCACAAGAATCAGCTG
AAGGAACCCAACCAGGACAGCCCCAACGACGACTGTCGCCCCTCCATCTT
TGACCTCACGCCACACGTGTACCTTATGTACTGCGAGAAGGTCAGCTTCC
GGAAGCTGATGCAGTACCACAGCCACATGGCCAGGGTTTACTACGCCCAG
CAGAAGAGTCACCTGCCCTCCTACTACTTTAAGGCCTACAACCTGGAGTT
CGCCGTCGGCGAGGCGGTGGTCCTATCCGCATCGTCACCGGCTCATCTGA
CAGGTCGCCGACTGGCCAAGGAAGTGCTTAGTGAAACGGCCCTCATGAGC
CGCCTATTCCGTATGGCCATCCACACGATTCTTAGTATTCCGCTGTACTA
TGTGCACACCAAGGTGATGCACGATCTTCTCAACGATACTGTGGACATGG
ACACCGTGAACAAGCACTATTGGAGGCTCATGGAGCAACATGCGGGCATC
GAGGCGCCCTCGGATCGCTCTGAAGGTGCCATTGATTTCCCCTACAAGTT
CTACGTGAACATCGACCAGAGTTTCCAGACTCAGAAATTCATATCGGAAG
TTCTGGGATATCAGTTCTATCGCGAGTTCTGCAAGAAGAGTTACAACAGG
GGGCCGCTCCACAACTGCGACTTCTATGGAAGCTTGGCCGTTGGCAATGA
TTTAAAAGCAATGATGTCATTGGGTTCTACGAAACCATGGAAACAGGTGG
TTGGCAAAATACTGCCCAATAACACGGGACTGAGTAGCTTGGCTCTGCTG
GAGTACTATCAACCTGTGTTGGACTGGCTCAATAAATACAATAAGGATGC
CAACTCGAAAATTGGATGGACTGCCTCCAAAAAAAAAATCGTTGCAAGCT
TTCTAGACCAT
BO28855.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ance-4-RA | 1830 | CG8196-PA | 1..1827 | 17..1843 | 9135 | 100 | Plus |
| Ance-4-RB | 1545 | CG8196-PB | 1..1542 | 302..1843 | 7710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ance-4-RA | 1948 | CG8196-RA | 56..1882 | 17..1843 | 9135 | 100 | Plus |
| Ance-4-RB | 2008 | CG8196-RB | 158..1942 | 59..1843 | 8925 | 100 | Plus |
| Ance-4-RB | 2008 | CG8196-RB | 56..97 | 17..58 | 210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9040554..9041811 | 1316..59 | 6290 | 100 | Minus |
| 2R | 25286936 | 2R | 9040272..9040491 | 1534..1315 | 1100 | 100 | Minus |
| 2R | 25286936 | 2R | 9039859..9040037 | 1835..1657 | 895 | 100 | Minus |
| 2R | 25286936 | 2R | 9040096..9040218 | 1656..1534 | 615 | 100 | Minus |
| 2R | 25286936 | 2R | 9042046..9042087 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:39:39 has no hits.
BO28855.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:37 Download gff for
BO28855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ance-4-RA | 56..1882 | 17..1845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:44 Download gff for
BO28855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ance-4-RA | 56..1882 | 17..1845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:38 Download gff for
BO28855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ance-4-RA | 56..1882 | 17..1845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:38 Download gff for
BO28855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9039851..9040037 | 1657..1843 | 97 | <- | Minus |
| 2R | 9040096..9040218 | 1534..1656 | 100 | <- | Minus |
| 2R | 9040273..9040490 | 1316..1533 | 100 | <- | Minus |
| 2R | 9040555..9041811 | 59..1315 | 100 | <- | Minus |
| 2R | 9042046..9042087 | 17..58 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:44 Download gff for
BO28855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4927356..4927542 | 1657..1843 | 97 | <- | Minus |
| arm_2R | 4927601..4927723 | 1534..1656 | 100 | <- | Minus |
| arm_2R | 4927778..4927995 | 1316..1533 | 100 | <- | Minus |
| arm_2R | 4928060..4929316 | 59..1315 | 100 | <- | Minus |
| arm_2R | 4929551..4929592 | 17..58 | 100 | | Minus |
BO28855.pep Sequence
Translation from 16 to 1861
> BO28855.pep
MGLLLLLVLIAGIGCATAAANIDLEAKTFVNQSSDRYYRFYNEIAAETYS
ANNEEDFDALFSKLNNVKRIAEELVSISRQAATYDLDRIRSPQTKMALQE
LRTAGDLFVLGDDYFSSVQMNLAALQTLSTDKDIEPYLGGANMPNEDDSP
LAYFPDIQKIVQSSKDADELKYYWEAWRDKNQLWASLNFYTIVQSYQRAA
KILEVPVHKLWYRYDSQEMLQQMEQAMTELRPAYQQLHAFVRQELHKKYG
SDVVNLNGPIPDHLFQQVLEQAWASGSILEDYYPRAQLPEFDEYVSHLTA
KTMVNESENFYTSLGFEPLSAEFHKNQLKEPNQDSPNDDCRPSIFDLTPH
VYLMYCEKVSFRKLMQYHSHMARVYYAQQKSHLPSYYFKAYNLEFAVGEA
VVLSASSPAHLTGRRLAKEVLSETALMSRLFRMAIHTILSIPLYYVHTKV
MHDLLNDTVDMDTVNKHYWRLMEQHAGIEAPSDRSEGAIDFPYKFYVNID
QSFQTQKFISEVLGYQFYREFCKKSYNRGPLHNCDFYGSLAVGNDLKAMM
SLGSTKPWKQVVGKILPNNTGLSSLALLEYYQPVLDWLNKYNKDANSKIG
WTASKKKIVASFLDH
BO28855.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:02:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ance-4-PA | 609 | CG8196-PA | 1..609 | 1..609 | 3195 | 100 | Plus |
| Ance-4-PB | 514 | CG8196-PB | 1..514 | 96..609 | 2726 | 100 | Plus |
| Ance-5-PA | 628 | CG10142-PA | 142..623 | 144..605 | 610 | 30.1 | Plus |
| Ance-PC | 615 | CG8827-PC | 3..611 | 4..606 | 607 | 27.9 | Plus |
| Ance-PB | 615 | CG8827-PB | 3..611 | 4..606 | 607 | 27.9 | Plus |
