BO28858.complete Sequence
1342 bp assembled on 2011-08-24
GenBank Submission: KX797770
> BO28858.complete
GAAGTTATCAGTCGACATGCTCAAAGCCGCAAAGATCCCCTTGTTCTTCG
CCCTTTTGGGTGCTGTGTGTATCCAGGCCGTCGTGGTTGGTCCCCAGCCA
TTGCATAATAACAACAGGAACGGCTACCGCTACAATGGCCCCGCCCACAA
GTATCTCCCATCGGAGGAGTCGCACTCGCACGGCAGCCCCTTGGATTCGA
GTCACCAGCATGATCAGCAGGGCCCCAGTAATGCCTACAACTCACATCAT
TACCCAGCACAGGAGCAACATGGCCAGGGAGCGCCGGAGCACGACCATCA
GCAGAAGGAGGTTGACTCCTGGCAAACGGCTCTTTCCCAGCAGCAACACG
AGAGCTTCGGAAACCAGCAAAATCATCAGAACGCCTACAATGAAGGACCT
GTGTACCAGCACTATCAGGGATTTAACCACCAACAACATTATGGATTAAG
CCAACAGCAACAGCATGAAAGCTACGGGCAGGAACACTATCAACAGAGCC
CCAACCAGCTGCAACACCATCAGTCCCAACACGCAAACGAATATGCCTAC
GAACCAGCTCATTTCCAGCAGCAACAGCAGCATCACGAAATTCAGGGTCA
CAAGCAGCATCAGCAGAGGAAAGAGCACTGGAACTTCGTTCAAGAGCAGC
AACCCCAAAATCACGAACCCTGGCAATCTTCGCATGGCTTCCAACAGCAC
CAGCAGCAGCATTCCAATCGCTTTGAGTCACAGCTTCCGCTGCGGGAAGA
CCTTTGGCAACCCATTCGTGAGCTGGACCTAGAGAAGCTTCCTTCGGCTG
AGGCGCACGCCAGTAGCCACAAGACAGTTGCAGCTCCTGGACGAGATGTA
AAGCTCGTGCCCAGTTACACGCTCTCCAGCGACTTTGAGCACGACCGCTT
CATCGGACTGGATAGTACGGACACTCGTCTGCTGACCCAATCTCTGCCAG
ATGCCTACCGGAAACAGCTGTTCTCCTCGCCACCAGAACCATCGTCTTTA
GCCCAGGGACATAACCAGCAACACAAGCCCGGATCCGCAGCCTATGGTGG
TTCCCACGGACCATCCCTTGGCGAATCCACATCCGATTTCCTGCAAATGC
AGTCCCACTCGTATCAGCTGCCTTCAACGTTTACTACTCACACGGAATGG
ACCCAGGACAAGGAGCAGCATCAGCACAATCCCCAGCAGCAGGCCACCGG
CAATCGTCAGTACTCGGCTAGTGCCTTCGCAGTGTCCCCTTCGTATCTGC
ACGCCTCCGAAGCCTCCCAGCCGCCCAAGAACAGCTTGCCACATCCTAGC
CGTGACTTCCAGCCACCTTACTACGCAAGCTTTCTAGACCAT
BO28858.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:08:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11381-RA | 1311 | CG11381-PA | 1..1308 | 17..1324 | 6540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:08:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11381-RA | 1603 | CG11381-RA | 86..1393 | 17..1324 | 6540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:08:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1203932..1205223 | 33..1324 | 6460 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:08:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..6920 | 445..653 | 234 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7002 | 426..711 | 212 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6964 | 483..729 | 212 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2464 | 566..711 | 202 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6861 | 563..711 | 199 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2544 | 452..662 | 198 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6918 | 504..711 | 198 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2514 | 504..710 | 196 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2616 | 491..791 | 193 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2687 | 426..742 | 193 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2372..2510 | 478..616 | 190 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..7012 | 338..589 | 182 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..7013 | 405..668 | 181 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2608 | 515..821 | 180 | 54.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6944 | 405..611 | 179 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2473 | 457..627 | 172 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6951 | 363..585 | 168 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2647..2945 | 426..718 | 167 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6897 | 566..711 | 167 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6646..6880 | 483..712 | 165 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2440 | 571..711 | 142 | 58.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1006..1150 | 453..589 | 139 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1373..1600 | 410..628 | 136 | 55 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1161 | 553..663 | 130 | 64.3 | Plus |
BO28858.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:13 Download gff for
BO28858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11381-RA | 84..1391 | 17..1326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:44 Download gff for
BO28858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11381-RA | 86..1393 | 17..1326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:07 Download gff for
BO28858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11381-RA | 86..1393 | 17..1326 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:07 Download gff for
BO28858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1203862..1203879 | 17..34 | 100 | -> | Plus |
| X | 1203934..1205223 | 35..1326 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:44 Download gff for
BO28858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1097895..1097912 | 17..34 | 100 | -> | Plus |
| arm_X | 1097967..1099256 | 35..1326 | 99 | | Plus |
BO28858.pep Sequence
Translation from 16 to 1342
> BO28858.pep
MLKAAKIPLFFALLGAVCIQAVVVGPQPLHNNNRNGYRYNGPAHKYLPSE
ESHSHGSPLDSSHQHDQQGPSNAYNSHHYPAQEQHGQGAPEHDHQQKEVD
SWQTALSQQQHESFGNQQNHQNAYNEGPVYQHYQGFNHQQHYGLSQQQQH
ESYGQEHYQQSPNQLQHHQSQHANEYAYEPAHFQQQQQHHEIQGHKQHQQ
RKEHWNFVQEQQPQNHEPWQSSHGFQQHQQQHSNRFESQLPLREDLWQPI
RELDLEKLPSAEAHASSHKTVAAPGRDVKLVPSYTLSSDFEHDRFIGLDS
TDTRLLTQSLPDAYRKQLFSSPPEPSSLAQGHNQQHKPGSAAYGGSHGPS
LGESTSDFLQMQSHSYQLPSTFTTHTEWTQDKEQHQHNPQQQATGNRQYS
ASAFAVSPSYLHASEASQPPKNSLPHPSRDFQPPYYASFLDH
BO28858.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:20:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11381-PA | 436 | CG11381-PA | 1..436 | 1..436 | 2407 | 100 | Plus |
| Smr-PF | 3601 | CG4013-PF | 4..291 | 16..283 | 213 | 24.6 | Plus |
| Smr-PE | 3601 | CG4013-PE | 4..291 | 16..283 | 213 | 24.6 | Plus |
| Smr-PD | 3601 | CG4013-PD | 4..291 | 16..283 | 213 | 24.6 | Plus |
| Smr-PG | 3607 | CG4013-PG | 4..297 | 16..283 | 202 | 23.9 | Plus |
