BO28862.complete Sequence
961 bp assembled on 2011-08-25
GenBank Submission: KX798686
> BO28862.complete
GAAGTTATCAGTCGACATGTTAAGCAGGAGGGTCATCGCATTCGCCGCTC
TGGCCCTCATCCAGATAGCCAGCGGTCAGGCCTCGCAATTCAGCAGGGAC
GAAAGTCAGGAGGATCAGAAGACGGAGTTTAACCTGGCCTCCACTCTGAC
GGGAGGCATTACCAGCAGTCGCCATCGCCAGCGGGCCAATCTCAATTCGC
AACTTTATCCTGGCCTTGGTCAGCTGGGATCGGGTTATGCGGGCGCAACT
GGATCCATCGACGATGCCCATGGCCATGAGCAGGGTGGCTCTGGCGTACG
AGTGGCCAGAGGTCACCAGATTCCCGCTTATCCGCCTCCGGGTTTTCCTG
GACAACAGGCTCCAGTTCCGTACCCAGCTGCAGGAGGCTCTTCAGGAGGA
TCCTCATCATCCGGTGGTTACCAAAGTGCAGGTGCTGTTTCTCCTCCTGG
CTATCCTGTTGCTGGAGCAGTTCCTGCTCAGTATCCGGTGGGAGTTCCTC
CCCAGCAGCCAGTGGGTGCAGGAGCACCTGGTTACTTCCCGGGAACTGGT
GCCTATCCTGGCTATCCCTACCCCGGAGTATACTTGCCACAGTACCCAGC
GTACCCTCAACCAGCCCAGTTCCCCGCCTATGGAGTGCTACCCGGAGCTG
TGGCTCAACCAGGAGTTCCTGGAGTAGCTGGAGTTCCGGGAGCACCTGGA
GTGGCAGGAGTGCCCGGAGCAGCTGGTCAGGCTCCTGCCACCAGCGGCAT
GAACTATCATCGCTATCCGGCTCACAATCCCGCTGATCCGAGCCATTGGG
ACCATCATTTCTCGATGAACACCGAGTACAAGGAGGATGGCGTCCACAAG
GGACCATTTGGAGTGCTGAACAATCACAATGCCTTTGGCTATGGCAGTGG
ATATGGGGGCGGATACAACGGTGCCTTCAACTCGCCGGCCTACGCAAGCT
TTCTAGACCAT
BO28862.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:52:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ela-RB | 930 | CG7021-PB | 1..927 | 17..943 | 4635 | 100 | Plus |
| Ela-RC | 990 | CG7021-PC | 353..987 | 309..943 | 3175 | 100 | Plus |
| Ela-RA | 990 | CG7021-PA | 353..987 | 309..943 | 3175 | 100 | Plus |
| Ela-RC | 990 | CG7021-PC | 1..293 | 17..309 | 1465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:52:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ela-RB | 1127 | CG7021-RB | 20..954 | 16..950 | 4645 | 99.8 | Plus |
| Ela-RC | 2135 | CG7021-RC | 373..1014 | 309..950 | 3180 | 99.7 | Plus |
| Ela-RA | 1187 | CG7021-RA | 373..1014 | 309..950 | 3180 | 99.7 | Plus |
| Ela-RC | 2135 | CG7021-RC | 20..313 | 16..309 | 1470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:52:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24866010..24866530 | 430..950 | 2575 | 99.6 | Plus |
| 3R | 32079331 | 3R | 24865369..24865662 | 16..309 | 1470 | 100 | Plus |
| 3R | 32079331 | 3R | 24865722..24865846 | 309..433 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:52:22 has no hits.
BO28862.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-25 13:53:04 Download gff for
BO28862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ela-RB | 25..946 | 22..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:39:27 Download gff for
BO28862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ela-RB | 26..947 | 22..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:44:40 Download gff for
BO28862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ela-RB | 26..947 | 22..945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:44:40 Download gff for
BO28862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24865375..24865661 | 22..308 | 100 | -> | Plus |
| 3R | 24865722..24865844 | 309..431 | 100 | -> | Plus |
| 3R | 24866012..24866523 | 432..945 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:39:27 Download gff for
BO28862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20691734..20692245 | 432..945 | 99 | | Plus |
| arm_3R | 20691097..20691383 | 22..308 | 100 | -> | Plus |
| arm_3R | 20691444..20691566 | 309..431 | 100 | -> | Plus |
BO28862.pep Sequence
Translation from 16 to 961
> BO28862.pep
MLSRRVIAFAALALIQIASGQASQFSRDESQEDQKTEFNLASTLTGGITS
SRHRQRANLNSQLYPGLGQLGSGYAGATGSIDDAHGHEQGGSGVRVARGH
QIPAYPPPGFPGQQAPVPYPAAGGSSGGSSSSGGYQSAGAVSPPGYPVAG
AVPAQYPVGVPPQQPVGAGAPGYFPGTGAYPGYPYPGVYLPQYPAYPQPA
QFPAYGVLPGAVAQPGVPGVAGVPGAPGVAGVPGAAGQAPATSGMNYHRY
PAHNPADPSHWDHHFSMNTEYKEDGVHKGPFGVLNNHNAFGYGSGYGGGY
NGAFNSPAYASFLDH
BO28862.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:27:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ela-PB | 309 | CG7021-PB | 1..309 | 1..309 | 1684 | 100 | Plus |
| Ela-PC | 329 | CG7021-PC | 1..329 | 1..309 | 1647 | 93.6 | Plus |
| Ela-PA | 329 | CG7021-PA | 1..329 | 1..309 | 1647 | 93.6 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 356..548 | 66..250 | 175 | 34.4 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 356..559 | 66..250 | 166 | 33.3 | Plus |
