BO28864.complete Sequence
1252 bp assembled on 2011-08-25
GenBank Submission: KX796957
> BO28864.complete
GAAGTTATCAGTCGACATGTCTCTGAACGCCGAGCGATCGTACAAAATGA
AACTGCGCGATGTGGAAAATGCCTTCAAATACCGGCGCATACCGTATCCC
AAGCGTTCCGTCGAGCTGATCGCCCTGCTGGCTATTTCGTGCACCTTCTT
CCTGTTCATGCACACCAACAAACTGAACAGTCGCCTCAAGGAGATGGAGG
TGAAGCTGCAGCCATCGGAGTTTTCGGCCCTCGGTCTAACGGGCAACCAC
ATCAGCGGACACGATGCGGGCAAGCACGATGACATCAACACCCTGCACGG
CACCTACCAATATCTGAAGAGCACTGGCCAGCTAAAACACCTGACCACCG
CCCAGCTAAACAACACTCCTCGCGCCCAAGTGGACACGCTGTTCTTCAAT
CGGATCACCAAGACCGGCAGCGAGAAGATGATGGAGTTGCTCAAGATCCT
GGGCAAGCGCCACAACTTTGAGGCGCGTCGCGATGTTGAGGGATTCTACG
AAGTAGTCATCATGCATGACGCCTTCGCCAAAAACTTTATCCGCACCGAG
GTACTCAACTGCACCAAAGCCAATAGCTATACGAAGCACGTAGCCTTCCT
GGACTTCGATCTACTGGACGAACCCTGGCCCATATACATCAATATGGTGC
GAGATCCCATCGAGCGGCTGGTCAGCTGGTTCTACTATGTCCGCGCCCCC
TGGCATTTCGCCGAGAGAAAGGAAATGTTCGGGGATGCCATCGTACTGCC
TAGCATAGATTGGCTCAGGAAGGACTTTAACCGCTGCATCGAGGAACGCG
ATCCCGAGTGTGTGTACGAGCAAATGGAAATGGGCAATCTGGGCGATCAT
AGGCGGCAGTCACTGTATCTCTGCGGTCAGAACATGGCGGTGTGCATGCC
CTTCAACTCCCATGAGGCCATGCAGCGGGCCAAGAAGAATGTGGAGGAGC
ACTACGCAGTGGTGGGAACCTGGGAGGATACGAACACCACGTTGTCGGTT
CTCGAGGGTTATATACCACGGTTCTTCAGTGGGGCCAAGGACCAGTACTA
CGCGTTGAGGAAAAGTTTGGGAAACTATAACAGGAATACCTACAGACCCA
GTCTCAGTGACAAGGCAAGGGCCGTACTCAGCCAGAACCTCACCCGGGAA
ATCGAGTTGTATCAGTTCGTCAGGCACCGGCTGTACAAGCAGTATATAGC
CCTAAAGCTCGAAGAAGATCCCAAGCTGTGGGATGCAAGCTTTCTAGACC
AT
BO28864.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:53:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pip-RK | 1221 | CG9614-PK | 1..1218 | 17..1234 | 6090 | 100 | Plus |
pip-RM | 879 | CG9614-PM | 1..317 | 17..333 | 1585 | 100 | Plus |
pip-RJ | 1206 | CG9614-PJ | 1..317 | 17..333 | 1585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:53:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pip-RK | 1478 | CG9614-RK | 180..1397 | 17..1234 | 6090 | 100 | Plus |
pip-RM | 2975 | CG9614-RM | 180..496 | 17..333 | 1585 | 100 | Plus |
pip-RJ | 1490 | CG9614-RJ | 180..496 | 17..333 | 1585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:53:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19311618..19312187 | 898..329 | 2850 | 100 | Minus |
3L | 28110227 | 3L | 19310975..19311316 | 1234..893 | 1695 | 99.7 | Minus |
3L | 28110227 | 3L | 19318784..19318951 | 272..105 | 840 | 100 | Minus |
3L | 28110227 | 3L | 19337342..19337430 | 105..17 | 445 | 100 | Minus |
3L | 28110227 | 3L | 19313152..19313214 | 335..273 | 300 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:53:26 has no hits.
BO28864.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-25 14:04:33 Download gff for
BO28864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pip-RK | 170..1387 | 17..1236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:39:59 Download gff for
BO28864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pip-RK | 180..1397 | 17..1236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:09 Download gff for
BO28864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pip-RK | 180..1397 | 17..1236 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:09 Download gff for
BO28864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19310971..19311311 | 898..1236 | 99 | <- | Minus |
3L | 19311619..19312184 | 332..897 | 100 | <- | Minus |
3L | 19313156..19313214 | 273..331 | 100 | <- | Minus |
3L | 19318784..19318950 | 106..272 | 100 | <- | Minus |
3L | 19337342..19337430 | 17..105 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:39:59 Download gff for
BO28864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19304071..19304411 | 898..1236 | 99 | <- | Minus |
arm_3L | 19304719..19305284 | 332..897 | 100 | <- | Minus |
arm_3L | 19306256..19306314 | 273..331 | 100 | <- | Minus |
arm_3L | 19311884..19312050 | 106..272 | 100 | <- | Minus |
arm_3L | 19330442..19330530 | 17..105 | 100 | | Minus |
BO28864.pep Sequence
Translation from 16 to 1252
> BO28864.pep
MSLNAERSYKMKLRDVENAFKYRRIPYPKRSVELIALLAISCTFFLFMHT
NKLNSRLKEMEVKLQPSEFSALGLTGNHISGHDAGKHDDINTLHGTYQYL
KSTGQLKHLTTAQLNNTPRAQVDTLFFNRITKTGSEKMMELLKILGKRHN
FEARRDVEGFYEVVIMHDAFAKNFIRTEVLNCTKANSYTKHVAFLDFDLL
DEPWPIYINMVRDPIERLVSWFYYVRAPWHFAERKEMFGDAIVLPSIDWL
RKDFNRCIEERDPECVYEQMEMGNLGDHRRQSLYLCGQNMAVCMPFNSHE
AMQRAKKNVEEHYAVVGTWEDTNTTLSVLEGYIPRFFSGAKDQYYALRKS
LGNYNRNTYRPSLSDKARAVLSQNLTREIELYQFVRHRLYKQYIALKLEE
DPKLWDASFLDH
BO28864.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:27:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pip-PK | 406 | CG9614-PK | 1..406 | 1..406 | 2158 | 100 | Plus |
pip-PA | 413 | CG9614-PA | 1..398 | 1..400 | 1231 | 59.6 | Plus |
pip-PD | 418 | CG9614-PD | 1..397 | 1..400 | 1203 | 57.6 | Plus |
pip-PG | 407 | CG9614-PG | 1..399 | 1..400 | 1139 | 56.7 | Plus |
pip-PH | 405 | CG9614-PH | 1..402 | 1..404 | 1126 | 56.5 | Plus |