BO28866.complete Sequence
1063 bp assembled on 2011-08-24
GenBank Submission: KX796198
> BO28866.complete
GAAGTTATCAGTCGACATGGTCAAAGAGGTTAATATGTCGGGGACGCAAA
TGTCTGCCTTCCTGAGAAAGTATCTAGCCGACGAGGACAAAAAAATTCGT
GCGCAATTCAAAGAAAGCGATCCTAACAACAAATTGATTCTATGGATGCA
CGAAAAAACGAGAATAACCGAGGAGGACTTGGCACGCCCATACACCGAGG
ACGAGGTAAAGGAGCTTTGTCTACGCACCAAAGTGAAGGTTGATATGACC
GCTTGGAATTGTCTGTGGGAAGCCAAAAAGAGGTTTGAAGCAAAAGGACG
TTTTGTGAACAAGTCTGAGAGATTCATCAACCGAATGTATATGAAAGCGG
TGCGCAGAAAGATGGTCCAACCGTATCCGGAGGAGTTTGTGGCCCAGCGA
AGAGAAATAGTTGCAGCCGAGACTAAGAAGCAGAACATCAGCCGATTGGA
TAGATGGCAAAAGAAAAAGAGTCAAAACCTATCAGCACCAGAATCCTCTC
CAGACGCTCATGCATCTTCTAATGACGCGGTGCAGAGCCACGAGGACCAA
GCAAACACAAATCTTAGTTCACTGTCTCAAATGAACTTTCAAGTGGAAGC
GATGGCTCCGCCAGGCGTGTCGTCATCTGATCTTAGCGGCATCGGAGACG
ATGAGGACGAACAGCAGCAGTCAGGATTTCAGGATGAGAACATCAACCGT
CCAGAGACAGAGATTAATGAGAATTCGGTGAGATGTGATCCAATTAATTT
AGGAAGGATGCGGACTGGATGTATAAATTCGCAAGCAAATAACAGTTTCC
GGAATACGGAGTCTGATCCGGACTACTATATGTTTGGCACCCAATTGAGC
ACATTAGTACGACCCACGTCGACTCAAGAGCCTGACGATCAGGTAAACTG
TCCAGAGACAGAGATGAATGAGAGCTGGGTAAGGTGTGATCAAATTAATT
CGGAAAGCTTGTCGATTGGACCGTCAATTGATTCGGAAGGAACTATCACT
TTTCAAAATACAGAATCTGAGCCGATCGACGTCACCTCAATAGCCGCAAG
CTTTCTAGACCAT
BO28866.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:06:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cav-RE | 1032 | CG6219-PE | 1..1029 | 17..1045 | 5145 | 100 | Plus |
| cav-RA | 1038 | CG6219-PA | 19..1035 | 29..1045 | 5085 | 100 | Plus |
| cav-RB | 1014 | CG6219-PB | 1..1011 | 35..1045 | 5055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:06:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cav-RE | 1776 | CG6219-RE | 640..1668 | 17..1045 | 5145 | 100 | Plus |
| cav-RB | 1226 | CG6219-RB | 96..1118 | 23..1045 | 5100 | 99.9 | Plus |
| cav-RA | 1520 | CG6219-RA | 396..1412 | 29..1045 | 5085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:06:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24222535..24223420 | 160..1045 | 4430 | 100 | Plus |
| 3R | 32079331 | 3R | 24222337..24222474 | 23..160 | 675 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:06:32 has no hits.
BO28866.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:11 Download gff for
BO28866.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cav-RE | 601..1629 | 17..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:25 Download gff for
BO28866.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cav-RE | 640..1668 | 17..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:07 Download gff for
BO28866.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cav-RE | 640..1668 | 17..1047 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:07 Download gff for
BO28866.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24222337..24222474 | 23..160 | 99 | -> | Plus |
| 3R | 24222536..24223420 | 161..1047 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:25 Download gff for
BO28866.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20048059..20048196 | 23..160 | 99 | -> | Plus |
| arm_3R | 20048258..20049142 | 161..1047 | 99 | | Plus |
BO28866.pep Sequence
Translation from 16 to 1063
> BO28866.pep
MVKEVNMSGTQMSAFLRKYLADEDKKIRAQFKESDPNNKLILWMHEKTRI
TEEDLARPYTEDEVKELCLRTKVKVDMTAWNCLWEAKKRFEAKGRFVNKS
ERFINRMYMKAVRRKMVQPYPEEFVAQRREIVAAETKKQNISRLDRWQKK
KSQNLSAPESSPDAHASSNDAVQSHEDQANTNLSSLSQMNFQVEAMAPPG
VSSSDLSGIGDDEDEQQQSGFQDENINRPETEINENSVRCDPINLGRMRT
GCINSQANNSFRNTESDPDYYMFGTQLSTLVRPTSTQEPDDQVNCPETEM
NESWVRCDQINSESLSIGPSIDSEGTITFQNTESEPIDVTSIAASFLDH
BO28866.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:20:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cav-PE | 343 | CG6219-PE | 1..343 | 1..343 | 1786 | 100 | Plus |
| cav-PA | 345 | CG6219-PA | 7..345 | 5..343 | 1767 | 100 | Plus |
| cav-PB | 337 | CG6219-PB | 1..337 | 7..343 | 1757 | 100 | Plus |
| cav-PD | 337 | CG6219-PD | 1..337 | 7..343 | 1757 | 100 | Plus |
