BO28867.complete Sequence
1522 bp assembled on 2011-09-20
GenBank Submission: KX796861
> BO28867.complete
GAAGTTATCAGTCGACATGAAACCCTTAACTGTGAAAGTGAACGATGACA
CCGGCAAGTCTTTGGCTAAGAAGAAGCTGCAGTCCAAGGCCAATTCCCTG
CTAAATGCCGAGCAAGTGGACATCAAAACGCTCAAGGGATTCGTACAATT
GCTGAATACGCCCGATAATATGCCAGCTGGCGAGGTGATGAATACACTCG
AGGTGATATTCAAGAATCTGCTAAAACGAAAGGCAATCGACGGCACCGAA
AAGCAGGGTCTCAAAATCAAAAAACTGTACGAGGAAACTTGGTTGCTTCT
CATCGAGAATCTACTGGTTGACTCGCAGTGTTCGGTTGCTGTAAAAGTGT
GCATGCAGCTCATCAAAGTGGAGGCCAAGCATCCCATAGCACCCAACAAG
GGTTGGCCCACCTACTGGATTCGCGGCATGCTGGAAACCCTAATAAATAG
CGATACAACGCCCACAACAGCGCTGGCAAACTATGGGAAATATTGCAAAA
ATCTCGATGTATTAGAGATAACCCTGACGCAATTGAAATCCTTAGTGCCC
GATGAAGACTTCAAGGACAGCCCCATTAAGGCCATGAACTTTCTATCCAT
TGTAAACCTCTTGGATATGGGAAAGTCTGTGCTGAGCACGGCAGATTACC
ACGTGGAAAGCGCCAAAAAGCAGACTTTTAACTACGAGTTAAATCGCAAA
AGACTGAATAATCTCTGGGCGACTATTATGGCAAAGGGCAACGAAGTGGA
CGAGAAACTGCATCGTCAAATACTTGTGGTGCTTCTGGAGCGCGTAATCA
ACCACCTGAACGATCCCATCCAGCTGACCGACTTTCTCATGGACTCCCTC
CATCAGTTTGATGGCCCCATTGCCTTGCTGGCTCTTCAGGGAATCTTTAC
GCTTATGCAAAAGCAGAATATCACCTATCCGGATGTGTATGAGAAGCTGT
ACAATATGTTCTATCCACGGATGTTCCACAACAAGTACAAGGCACGCCTG
TTTTACTTGGCCGATATCTTTCTGACCTCCACCCATTTGCCCGAGAATCT
GGTGGCGGCATTCGTTAAGCGTCTCGCTCGCCTGGCCCTTCAATCGCCGA
CCGAAGATGCTGTTATTATGATTCGATTCGTTTGCAATCTGCTATTGAGA
CATACTGGATTGCAGAAATTGATTCGCGCCAGCCATGCAGTCGATGAGGT
CAGCGATCCTTACAATCAAACAGAAACGGATCCCGTCAAATCGGAGGCCA
TAAACAGTTCGCTGTGGGAAATTACGTTGCTGCAGAAACACGTTGTACCA
GAGGTGGCCAATGCGGCACGGTTTATTAACTCATCGCTGCCCGTAATGGA
ATTCGACTTAGCACCCCTCTTGGACAGAAAGGAATGCAATATTTTCGACG
ACGAATTACAGTCGAAGGCCAAACAATTTGCTCTGAACTACGAACGTCCT
ACCAATTTGGCTTTGCCTAAAAACCAATTCGTGACCAAATACTGGGACCT
CATCGCAAGCTTTCTAGACCAT
BO28867.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:48:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2875-RC | 1491 | CG2875-PC | 1..1488 | 17..1504 | 7440 | 100 | Plus |
| CG2875-RB | 1491 | CG2875-PB | 1..1488 | 17..1504 | 7440 | 100 | Plus |
| CG2875-RA | 1494 | CG2875-PA | 1..1491 | 17..1504 | 7375 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:48:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2875-RC | 1975 | CG2875-RC | 118..1605 | 17..1504 | 7440 | 100 | Plus |
| CG2875-RB | 1710 | CG2875-RB | 118..1605 | 17..1504 | 7440 | 100 | Plus |
| CG2875-RA | 1713 | CG2875-RA | 118..1608 | 17..1504 | 7375 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:48:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3572595..3573301 | 860..154 | 3535 | 100 | Minus |
| X | 23542271 | X | 3572003..3572533 | 1390..860 | 2655 | 100 | Minus |
| X | 23542271 | X | 3573368..3573505 | 154..17 | 690 | 100 | Minus |
| X | 23542271 | X | 3571826..3571939 | 1504..1391 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:48:57 has no hits.
BO28867.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:55:35 Download gff for
BO28867.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2875-RB | 116..1603 | 17..1506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:47 Download gff for
BO28867.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2875-RB | 118..1605 | 17..1506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:17 Download gff for
BO28867.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2875-RB | 118..1605 | 17..1506 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:17 Download gff for
BO28867.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3571824..3571939 | 1391..1506 | 98 | <- | Minus |
| X | 3572003..3572532 | 861..1390 | 100 | <- | Minus |
| X | 3572595..3573300 | 155..860 | 100 | <- | Minus |
| X | 3573368..3573505 | 17..154 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:47 Download gff for
BO28867.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3465857..3465972 | 1391..1506 | 98 | <- | Minus |
| arm_X | 3466036..3466565 | 861..1390 | 100 | <- | Minus |
| arm_X | 3466628..3467333 | 155..860 | 100 | <- | Minus |
| arm_X | 3467401..3467538 | 17..154 | 100 | | Minus |
BO28867.pep Sequence
Translation from 16 to 1522
> BO28867.pep
MKPLTVKVNDDTGKSLAKKKLQSKANSLLNAEQVDIKTLKGFVQLLNTPD
NMPAGEVMNTLEVIFKNLLKRKAIDGTEKQGLKIKKLYEETWLLLIENLL
VDSQCSVAVKVCMQLIKVEAKHPIAPNKGWPTYWIRGMLETLINSDTTPT
TALANYGKYCKNLDVLEITLTQLKSLVPDEDFKDSPIKAMNFLSIVNLLD
MGKSVLSTADYHVESAKKQTFNYELNRKRLNNLWATIMAKGNEVDEKLHR
QILVVLLERVINHLNDPIQLTDFLMDSLHQFDGPIALLALQGIFTLMQKQ
NITYPDVYEKLYNMFYPRMFHNKYKARLFYLADIFLTSTHLPENLVAAFV
KRLARLALQSPTEDAVIMIRFVCNLLLRHTGLQKLIRASHAVDEVSDPYN
QTETDPVKSEAINSSLWEITLLQKHVVPEVANAARFINSSLPVMEFDLAP
LLDRKECNIFDDELQSKAKQFALNYERPTNLALPKNQFVTKYWDLIASFL
DH
BO28867.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:10:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2875-PC | 496 | CG2875-PC | 1..496 | 1..496 | 2545 | 100 | Plus |
| CG2875-PB | 496 | CG2875-PB | 1..496 | 1..496 | 2545 | 100 | Plus |
| CG2875-PA | 497 | CG2875-PA | 1..497 | 1..496 | 2533 | 99.8 | Plus |
