BO28868.complete Sequence
1108 bp assembled on 2011-08-24
GenBank Submission: KX795173
> BO28868.complete
GAAGTTATCAGTCGACATGGATTCAAGCCAGTCCCGCAAAAACGGTTTCT
TGCTGCACTTACCACTCGAAACGAAGAGGAATCCATCTAACCCTAATACT
CCGTTAAGTAATCTTCTGAATCTCACGGACTTCCACTACTTGCTGGCCAG
TAATGTGTGTCGAAAGGCAAAAAGAGAACTCTTAGCCGTTTTAATAGTTA
CTTCGTATGCCGGACACGATGCCTTGCGATCAGCTCACCGACAGGCAATT
CCCCAAAGCAAACTGGAAGAAATGGGCCTGCGAAGAGTTTTTCTCTTGGC
AGCCCTGCCTTCAAGAGAGCATTTTATAAGCCAGGATCAACTGGCCAGCG
AACAGAATCGTTTCGGGGACCTTCTCCAGGGGAATTTCATCGAGGACTAT
CGCAATCTGAGCTACAAACACGTAATGGGATTAAAGTGGGTCTCTGAGGA
GTGCAAAAAGCAGGCCAAGTTTATCATTAAACTGGATGATGACATCATTT
ACGATGTGTTTCATCTGCGCAGGTATTTAGAGACCCTCGAGGTGCGCGAA
CCTGGACTGGCCACATCAAGTACTTTGTTATCTGGCTACGTACTGGATGC
CAAGCCCCCCATTCGCCTTCGAGCCAATAAGTGGTACGTTAGCAAAAAGG
AGTATCCTCAGGCTTTATATCCCGCCTATTTGTCGGGCTGGCTTTACGTG
ACCAACGTGCCAACAGCCGAGAGGATTGTGGCGGAGGCGGAGAGGATGTC
ATTTTTTTGGATCGATGACACCTGGTTGACTGGAGTAGTAAGGACTCGTT
TGGGTATTCCCCTTGAGCGTCACAACGACTGGTTTTCTGCCAATGCAGAG
TTCATCGACTGCTGTGTGCGAGATCTCAAGAAGCACAACTATGAGTGCGA
GTACTCCGTGGGACCCAATGGCGGTGACGACCGACTACTGGTGGAATTTC
TGCATAACGTTGAGAAGTGCTACTTTGATGAATGCGTCAAACGGCCGGTT
GGTAAGTCGCTCAAAGAGACCTGTTTAGCGGCGGCCAAATCTCGACCCCC
TAAACATGGTTTTCCTGAAATAAAAGCGTTGCGACTCAGGGCAAGCTTTC
TAGACCAT
BO28868.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:07:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3038-RB | 1077 | CG3038-PB | 1..1074 | 17..1090 | 5370 | 100 | Plus |
| CG3038-RA | 1167 | CG3038-PA | 93..1164 | 19..1090 | 5360 | 100 | Plus |
| CG3038-RC | 1080 | CG3038-PC | 510..1077 | 523..1090 | 2840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:07:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3038-RB | 1630 | CG3038-RB | 176..1249 | 17..1090 | 5370 | 100 | Plus |
| CG3038-RA | 1731 | CG3038-RA | 279..1350 | 19..1090 | 5360 | 100 | Plus |
| CG3038-RC | 1751 | CG3038-RC | 696..1263 | 523..1090 | 2840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:07:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 244442..245350 | 1090..182 | 4545 | 100 | Minus |
| X | 23542271 | X | 245412..245578 | 185..19 | 835 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:07:02 has no hits.
BO28868.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:12 Download gff for
BO28868.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3038-RB | 162..1235 | 17..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:43 Download gff for
BO28868.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3038-RB | 176..1249 | 17..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:22 Download gff for
BO28868.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3038-RB | 176..1249 | 17..1092 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:22 Download gff for
BO28868.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 244438..245346 | 186..1092 | 99 | <- | Minus |
| X | 245412..245580 | 17..185 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:43 Download gff for
BO28868.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 138471..139379 | 186..1092 | 99 | <- | Minus |
| arm_X | 139445..139613 | 17..185 | 99 | | Minus |
BO28868.pep Sequence
Translation from 16 to 1108
> BO28868.pep
MDSSQSRKNGFLLHLPLETKRNPSNPNTPLSNLLNLTDFHYLLASNVCRK
AKRELLAVLIVTSYAGHDALRSAHRQAIPQSKLEEMGLRRVFLLAALPSR
EHFISQDQLASEQNRFGDLLQGNFIEDYRNLSYKHVMGLKWVSEECKKQA
KFIIKLDDDIIYDVFHLRRYLETLEVREPGLATSSTLLSGYVLDAKPPIR
LRANKWYVSKKEYPQALYPAYLSGWLYVTNVPTAERIVAEAERMSFFWID
DTWLTGVVRTRLGIPLERHNDWFSANAEFIDCCVRDLKKHNYECEYSVGP
NGGDDRLLVEFLHNVEKCYFDECVKRPVGKSLKETCLAAAKSRPPKHGFP
EIKALRLRASFLDH
BO28868.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:20:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3038-PB | 358 | CG3038-PB | 1..358 | 1..358 | 1893 | 100 | Plus |
| CG3038-PA | 388 | CG3038-PA | 32..388 | 2..358 | 1888 | 100 | Plus |
| CG3038-PC | 359 | CG3038-PC | 32..359 | 2..358 | 1692 | 91.9 | Plus |
| CG11357-PD | 434 | CG11357-PD | 99..341 | 16..263 | 319 | 30.3 | Plus |
| CG11357-PC | 434 | CG11357-PC | 99..341 | 16..263 | 319 | 30.3 | Plus |
