BO28869.complete Sequence
1612 bp assembled on 2011-09-19
GenBank Submission: KX797647
> BO28869.complete
GAAGTTATCAGTCGACATGAAATATATAAATTGCACTCAGCCCGCCATCG
ATGACTTCCCCCGAGACCTATTCTCGGAGGCGCAAAGACAGTCTGGTGCT
GTTGTACTTCATGTTATAGCCAGTTTATATTTATTTGTAGCCTTAGCCGT
AGTGTGTGATGAGTACTTTGTGCCAGCAGTTGAGAAAATATGTGCAGCAC
TCAACATGTCCAATGATGTGGCGGGTGCCACTTTCATGGCCGCGGCCACC
TCCGCCCCAGAATTATTTGTCAACGTGATAGGAACCTTTATCACGGAGGG
CGACATCGGAGTGGGCACGATTGTCGGATCGGCGGTATTTAACATCCTGG
CAGTGGCCGCGTGCTGCGGAATCGGAGCTGGCATGACAATACCCTTGGAC
TGGTGGCCACTGACGCGGGACAGCATCGCATACGGAGTTACAGTGGCCAT
TCTCATTTGTGTTATGCACGACGAGCGCGTCGAGTGGTATGAGGCCCTCA
TCCTGGTCTCCCTGTATGCCGTCTATCTTGCGGTCATGTATTTCGACAAA
ACTTTCCAAAAGTGCGCCAAAGGTGGCGTTAAGCAGGCTCGTTCTCGCAG
CCGGTCCTCCAACTGCAGCATACATACAAAGAACAGCAATGAGAAGGAAC
CAGAGCTTGTGGAAAACCGCATTTGCCAGAACATGGCGAACATACAGCTA
AACGGAGGACTTAACAAAGAGCAGGCCAAGGCCACAAGCACATCCGGAGC
CGGTACCACCGCGATTTCGATAACCACCTCGACCATGACCACAACTTTGA
GCACCACCCATAGTGCCGGAGGAGGAGGTGGAGCAGTTGGTCTTTGTTCG
GGACCAGGGGCCATTGTGCAGATGGCACCACTAGACGATGCCGAGGCAGA
ATCTCACGTGGCCGTAGCAGCCGCTGACGAGGGCCGTAAGGAGGAGGGAT
ACTCTCTGCTCTCATACCCGAAGGATAAGAGCTGCTTTGCCCAGTTTACC
TGGCTCATCATTTGGCCGATCCATCTGCTATTTCGCATTGCCATTCCTGA
CTGCAAGAAGGCCAAAAACAATAAGATTTTCCCACTGACCTTTATCATGT
GCATAGTTTGGATCGGATCGCTTTCCTATGTAGTAGCGTGGATGATAACG
ATAATCGGAGACACACTAAAGATTCCTGACTCGGTGATGGGGATTACGTT
CCTGGCAGCTGGTACCAGTGTCCCTGAAGCGGTGTCTAGTGTTATTGTGG
CGAAGCGCGGTCACGGATCAATGGGAATCTGTAACTCTATTGGGTCAAAC
ACTTTCGACATCCTGCTGTGCCTGGGGGTTCCCTGGCTGATCAAAGCAGT
ATTTTTCCCGATCCAACCGGGCCAAAACTACGTGGCCATAAACTCCGCCG
GATTGGAGTACTCGGCGATCACTTTGTTGTCGACACTGTTCCTGCTTTAC
CTGACCTTCTCCACAAACAAGTTTAAGCTGGACAAGAAGGTGGGCACTGC
CTGTCTGGTGATGTATCTGGTCTTCATGGTTTTCGCCTCCCTCATCGAAC
TCAATGTGTTCTTCCGCGTCAACCTGCCCACCTGCGGTCGATCAGCAAGC
TTTCTAGACCAT
BO28869.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zyd-RA | 1581 | CG2893-PA | 1..1578 | 17..1594 | 7890 | 100 | Plus |
| zyd-RF | 1629 | CG2893-PF | 55..1626 | 23..1594 | 7860 | 100 | Plus |
| zyd-RE | 1608 | CG2893-PE | 35..1605 | 24..1594 | 7855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zyd-RA | 2172 | CG2893-RA | 153..1731 | 16..1594 | 7895 | 100 | Plus |
| zyd-RF | 2094 | CG2893-RF | 82..1653 | 23..1594 | 7860 | 100 | Plus |
| zyd-RH | 2341 | CG2893-RH | 330..1900 | 24..1594 | 7855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 23032743..23033250 | 651..1158 | 2540 | 100 | Plus |
| X | 23542271 | X | 23033701..23034036 | 1259..1594 | 1680 | 100 | Plus |
| X | 23542271 | X | 23030420..23030613 | 196..389 | 955 | 99.5 | Plus |
| X | 23542271 | X | 23030666..23030856 | 385..575 | 955 | 100 | Plus |
| X | 23542271 | X | 23030190..23030363 | 24..197 | 870 | 100 | Plus |
| X | 23542271 | X | 23033542..23033646 | 1157..1261 | 525 | 100 | Plus |
| X | 23542271 | X | 23032518..23032600 | 571..653 | 415 | 100 | Plus |
| X | 23542271 | X | 23044008..23044153 | 205..350 | 190 | 75.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:41:45 has no hits.
BO28869.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:38 Download gff for
BO28869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2893-RA | 148..1725 | 17..1596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:10 Download gff for
BO28869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zyd-RA | 154..1731 | 17..1596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:27 Download gff for
BO28869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zyd-RA | 154..1731 | 17..1596 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:27 Download gff for
BO28869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 23033543..23033644 | 1158..1259 | 100 | -> | Plus |
| X | 23032746..23033249 | 654..1157 | 100 | -> | Plus |
| X | 23030190..23030363 | 24..197 | 100 | -> | Plus |
| X | 23030422..23030609 | 198..385 | 100 | -> | Plus |
| X | 23030667..23030853 | 386..572 | 100 | -> | Plus |
| X | 23032520..23032600 | 573..653 | 100 | -> | Plus |
| X | 23033702..23034036 | 1260..1596 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:10 Download gff for
BO28869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XHet | 9008..9181 | 24..197 | 100 | -> | Plus |
| XHet | 9240..9427 | 198..385 | 100 | -> | Plus |
| XHet | 9485..9671 | 386..572 | 100 | -> | Plus |
| XHet | 11338..11418 | 573..653 | 100 | -> | Plus |
| XHet | 11564..12067 | 654..1157 | 100 | -> | Plus |
| XHet | 12361..12462 | 1158..1259 | 100 | -> | Plus |
| XHet | 12520..12854 | 1260..1596 | 99 | | Plus |
BO28869.pep Sequence
Translation from 16 to 1612
> BO28869.pep
MKYINCTQPAIDDFPRDLFSEAQRQSGAVVLHVIASLYLFVALAVVCDEY
FVPAVEKICAALNMSNDVAGATFMAAATSAPELFVNVIGTFITEGDIGVG
TIVGSAVFNILAVAACCGIGAGMTIPLDWWPLTRDSIAYGVTVAILICVM
HDERVEWYEALILVSLYAVYLAVMYFDKTFQKCAKGGVKQARSRSRSSNC
SIHTKNSNEKEPELVENRICQNMANIQLNGGLNKEQAKATSTSGAGTTAI
SITTSTMTTTLSTTHSAGGGGGAVGLCSGPGAIVQMAPLDDAEAESHVAV
AAADEGRKEEGYSLLSYPKDKSCFAQFTWLIIWPIHLLFRIAIPDCKKAK
NNKIFPLTFIMCIVWIGSLSYVVAWMITIIGDTLKIPDSVMGITFLAAGT
SVPEAVSSVIVAKRGHGSMGICNSIGSNTFDILLCLGVPWLIKAVFFPIQ
PGQNYVAINSAGLEYSAITLLSTLFLLYLTFSTNKFKLDKKVGTACLVMY
LVFMVFASLIELNVFFRVNLPTCGRSASFLDH
BO28869.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:02:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zyd-PA | 526 | CG2893-PA | 1..526 | 1..526 | 2710 | 100 | Plus |
| zyd-PF | 542 | CG2893-PF | 19..542 | 3..526 | 2700 | 100 | Plus |
| zyd-PE | 535 | CG2893-PE | 13..535 | 4..526 | 2693 | 100 | Plus |
| zyd-PG | 499 | CG2893-PG | 1..499 | 1..526 | 2532 | 94.9 | Plus |
| zyd-PH | 463 | CG2893-PH | 1..463 | 64..526 | 2387 | 100 | Plus |
