Clone BO28870 Report

Search the DGRC for BO28870

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:288
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG8079-RB
Protein status:BO28870.pep: Imported from assembly
Sequenced Size:1831

Clone Sequence Records

BO28870.complete Sequence

1831 bp assembled on 2011-10-14

GenBank Submission: KX796784

> BO28870.complete
GAAGTTATCAGTCGACATGTCGTTACCGGCTGAAGAGGAGGATTTGGCGG
ACACTGTCGCCAAGTACGATTCCATCGAATTGAAGAGCATACAGGACCTG
GAAACCTGCGAGCAGCAACAACTACTGCAGTACGTCGAAAAGCTGCACGG
GATTATCCGCAAATACGACACCAAACTGGCGTCCTATAAACAAAAACTCC
TACACTACGTAAGCCGGGAAGAAAAGGTTTCGTGTGACAAAGCCAGCCAA
GCAACTGAATCGGAATTACAAGAATGCCAGTATTCCATGGAAAACGATGA
GGATACTAACAAAAAAGACCAGCCCAACGATTTATCGGCGACGGACGCCT
TCAGTTTTGTGGACGAAATGAGGCAGGCAGCCAAGCACGCCGAAAACCTG
AACAACTTCGTTTACGAGCACACCTCTGGCATGTACTACGATCCCAAGAC
GGGATACTACTATAACGCGGAGTACGGGCTGTACTACGATGGTAACAACG
GCTGCTACTACAGCTATGATCACGCCAAAGACTCGTACGAGTTCCACTCT
CAGGCCCAGGCGAACGATGCGGCCAAACCGGAATCGGAGGACGAGGATTT
GGAGGTGCAGTTCGATGAGCTGGGAGGCGTCATTACGGACCACGAAACGC
TGAAGAAGATTAAGGCCGAGAAGCAAAAGGCCAAAGATCAAGCTGAAAAA
TCCAAGCGCAAAGCCAAGAAAAAGAAGAGTAAAAAGCACAGCAAGAAGAG
ATCCAAGAAGGAGCGCCGTCACAAGTCCAAGAAGCGTCACAGGCATTCTG
ATGATGAGCGGTCTAATGATGCCGAGGAGGGCGAGCTGTCGCAAAGCAGC
GACTCCAGTTCCGACTCTAGCAACGAGGATAGCAGCAGCAACACGGAAGA
CAGCAGTGTTCCAGTTTTCAAGGCTGCCGGACGCTTTCAAGACATTGCTA
AAAAGTATCCACCCTCCCTCCGCATCATTGTCCAGGAGACTAACGTAGAG
TCGCTGAAAGTGGGAAGCCTGCATCTAATCACATACAAAGGTGGATCTCT
TGGACGGGAGGGCGCTCACGATGTTATCATTCCGGACGTGAACGTCAGCA
AGTGCCACTTAAAGTTTAAGTATGAGAACAAGTTGGGAATCTACCAATGT
CTTGATCTGGGCTCCCGAAACGGTACCATTCTCAATGGATCCCCAATGTC
CAGCGACGCCATGGATCTCGTTCACGGCAGTGTTATCACTCTGGGCCAAA
CAAGACTACTGTGTCATGTCCACGAGGGTAACAGTACCTGCGGTTTGTGC
GAGCCGGGCCTTTTGATAGAGAATTCTCCGCCGGTAGTGGCCGCTGTTGC
CTCATCCACCGCATCCGTATTATCTCACAAGGAGCAGTTAAAAAAACTGC
AGCGCAAATATGGACTAGAAAACGAAAAATTCGTTGATACTAGCGGCAAT
GGGCAGTCCAACTACAATGATCGTGCCGCAACAAGGAGAGTCCAGGTGGG
CAGCAGTACAGATAAAGAAAAGACTGAGGTGGCTTGTGTGAACACTGAAA
TCGGTAGCTCTAATAAGGGTTTTAAAATGCTGAGTAAATTGGGCTGGCAA
AAGGGCGAAAAACTGGGCAAAACAAATGCCAGTGCTGGACTTTTGGAGCC
GATCAATGTGGTAGCCAATGAGGGCACTAGCGGTCTGGGAAACAGTGACC
CAGTGCTGTCCAGCTCCAGAACCATTGACAAACGGAAGCTGGCCAACTTG
AAGATCACTCAGGCGCGATATCAGCGCGCCAGTGATATGTTTGGACAATC
GGATGATAGTGATGCAAGCTTTCTAGACCAT

BO28870.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-RB 1800 CG8079-PB 1..1797 17..1813 8985 100 Plus
CG8079-RA 1806 CG8079-PA 1..1803 17..1813 8890 99.7 Plus
CG8079-RC 1506 CG8079-PC 630..1503 940..1813 4370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-RB 2218 CG8079-RB 84..1880 17..1813 8985 100 Plus
CG8079-RA 2156 CG8079-RA 84..1886 17..1813 8890 99.7 Plus
CG8079-RD 2159 CG8079-RD 777..2033 557..1813 6285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15222495..15222982 940..1427 2440 100 Plus
2R 25286936 2R 15222041..15222425 557..941 1925 100 Plus
2R 25286936 2R 15218464..15218657 17..210 970 100 Plus
2R 25286936 2R 15223383..15223545 1651..1813 815 100 Plus
2R 25286936 2R 15221429..15221566 333..470 690 100 Plus
2R 25286936 2R 15218713..15218836 209..332 620 100 Plus
2R 25286936 2R 15223042..15223159 1428..1545 590 100 Plus
2R 25286936 2R 15223221..15223326 1546..1651 530 100 Plus
2R 25286936 2R 15221727..15221818 469..560 460 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:59:57 has no hits.

BO28870.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:57:40 Download gff for BO28870.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RB 84..1880 17..1815 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:43:16 Download gff for BO28870.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RB 84..1880 17..1815 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:04 Download gff for BO28870.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RB 84..1880 17..1815 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:04 Download gff for BO28870.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15218464..15218655 17..208 100 -> Plus
2R 15218713..15218836 209..332 100 -> Plus
2R 15221429..15221565 333..469 100 -> Plus
2R 15221728..15221817 470..559 100 -> Plus
2R 15222044..15222425 560..941 100 -> Plus
2R 15222497..15222982 942..1427 100 -> Plus
2R 15223042..15223159 1428..1545 100 -> Plus
2R 15223221..15223326 1546..1651 100 -> Plus
2R 15223384..15223545 1652..1815 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:43:16 Download gff for BO28870.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11105969..11106160 17..208 100 -> Plus
arm_2R 11106218..11106341 209..332 100 -> Plus
arm_2R 11108934..11109070 333..469 100 -> Plus
arm_2R 11109233..11109322 470..559 100 -> Plus
arm_2R 11109549..11109930 560..941 100 -> Plus
arm_2R 11110002..11110487 942..1427 100 -> Plus
arm_2R 11110547..11110664 1428..1545 100 -> Plus
arm_2R 11110726..11110831 1546..1651 100 -> Plus
arm_2R 11110889..11111050 1652..1815 98   Plus

BO28870.pep Sequence

Translation from 16 to 1831

> BO28870.pep
MSLPAEEEDLADTVAKYDSIELKSIQDLETCEQQQLLQYVEKLHGIIRKY
DTKLASYKQKLLHYVSREEKVSCDKASQATESELQECQYSMENDEDTNKK
DQPNDLSATDAFSFVDEMRQAAKHAENLNNFVYEHTSGMYYDPKTGYYYN
AEYGLYYDGNNGCYYSYDHAKDSYEFHSQAQANDAAKPESEDEDLEVQFD
ELGGVITDHETLKKIKAEKQKAKDQAEKSKRKAKKKKSKKHSKKRSKKER
RHKSKKRHRHSDDERSNDAEEGELSQSSDSSSDSSNEDSSSNTEDSSVPV
FKAAGRFQDIAKKYPPSLRIIVQETNVESLKVGSLHLITYKGGSLGREGA
HDVIIPDVNVSKCHLKFKYENKLGIYQCLDLGSRNGTILNGSPMSSDAMD
LVHGSVITLGQTRLLCHVHEGNSTCGLCEPGLLIENSPPVVAAVASSTAS
VLSHKEQLKKLQRKYGLENEKFVDTSGNGQSNYNDRAATRRVQVGSSTDK
EKTEVACVNTEIGSSNKGFKMLSKLGWQKGEKLGKTNASAGLLEPINVVA
NEGTSGLGNSDPVLSSSRTIDKRKLANLKITQARYQRASDMFGQSDDSDA
SFLDH

BO28870.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-PB 599 CG8079-PB 1..599 1..599 3092 100 Plus
CG8079-PA 601 CG8079-PA 1..601 1..599 3079 99.7 Plus
CG8079-PC 501 CG8079-PC 211..501 309..599 1490 100 Plus
CG8079-PC 501 CG8079-PC 1..181 1..181 965 100 Plus
CG8079-PE 229 CG8079-PE 1..181 1..181 965 100 Plus
CG8079-PD 250 CG8079-PD 1..181 1..181 965 100 Plus