BO28880.complete Sequence
2326 bp assembled on 2011-09-19
GenBank Submission: KX798793
> BO28880.complete
GAAGTTATCAGTCGACATGTTGCACACGATGCAGCTGCTCCTGCTGGCCA
CTATTGTGGGCATGGTCAGGAGCTCGCCGTACACGAGCTATCAGAACCAA
CGGTTCGCCATGGAGCCGCAGGATCAGACGGCAGTGGTTGGGGCCAGGGT
AACGCTACCCTGCCGAGTGATCAACAAACAGGGCACGCTCCAATGGACCA
AGGATGACTTTGGACTTGGCACGTCCCGGGATCTGAGTGGATTCGAACGC
TACGCGATGGTGGGCAGTGACGAGGAGGGTGACTACTCCCTGGACATTTA
TCCAGTGATGCTGGACGACGATGCTCGTTACCAGTGCCAAGTGAGCCCAG
GTCCCGAGGGCCAACCAGCCATTAGGTCCACATTCGCCGGATTGACGGTG
CTCGTTCCGCCCGAGGCGCCCAAAATCACACAGGGCGACGTCATCTATGC
CACCGAGGATCGCAAAGTGGAGATCGAGTGCGTTTCGGTTGGCGGAAAGC
CGGCTGCTGAGATTACCTGGATTGATGGCCTGGGCAATGTCCTTACGGAT
AACATTGAGTACACGGTGATACCGCTGCCCGATCAGCGACGCTTTACGGC
CAAGTCCGTCCTGCGATTGACCCCCAAAAAGGAACACCACAACACGAACT
TCAGTTGCCAGGCGCAGAACACGGCGGACCGCACCTATCGCTCGGCGAAA
ATACGTGTCGAGGTGAAATATGCCCCCAAGGTGAAGGTGAATGTGATGGG
CTCGCTTCCCGGCGGTGCAGGTGGTTCGGTTGGTGGTGCAGGCGGTGGCA
GTGTCCACATGAGCACCGGTTCCCGTATTGTGGAGCATTCGCAGGTGCGC
TTGGAGTGCCGGGCAGATGCGAATCCCAGCGATGTCCGGTACCGCTGGTT
CATAAACGACGAACCGATCATCGGCGGCCAGAAGACAGAGATGGTGATAC
GCAATGTGACTCGCAAGTTCCACGATGCGATTGTCAAGTGCGAGGTGCAG
AATTCCGTGGGCAAGAGTGAGGACAGCGAAACCCTTGACATAAGCTATGC
TCCCAGTTTCCGGCAGCGACCACAGTCAATGGAGGCGGACGTTGGCAGCG
TGGTGTCCCTAACCTGCGAGGTGGACAGCAATCCGCAGCCGGAGATCGTC
TGGATACAGCATCCCAGTGACCGGGTGGTCGGCACCAGCACAAATCTCAC
ATTCAGTGTGAGCAATGAGACGGCTGGAAGGTACTACTGCAAGGCCAATG
TACCCGGATACGCTGAGATTTCGGCAGATGCCTATGTCTATCTGAAGGGC
TCGCCGGCGATTGGATCGCAGAGGACACAGTACGGACTGGTGGGAGATAC
GGCTCGGATCGAATGCTTTGCCAGCAGTGTTCCTCGAGCCCGTCACGTCT
CGTGGACGTTCAACGGCCAGGAGATCAGCTCGGAATCGGGACACGACTAT
TCGATTCTGGTTGATGCCGTGCCGGGGGGCGTGAAGAGCACGCTCATCAT
TAGGGACAGCCAGGCCTACCACTACGGAAAGTACAACTGCACGGTGGTCA
ACGATTACGGCAACGACGTGGCCGAGATTCAGCTGCAAGCCAAGAAGAGC
GTTTCCCTGCTGATGACAATTGTGGGCGGCATTTCGGTGGTGGCCTTCCT
GCTGGTGCTGACCATTTTGGTTGTGGTCTACATCAAGTGTAAGAAGCGCA
CCAAGCTGCCGCCAGCGGATGTGATAAGCGAGCATCAGATCACGAAAAAT
GGCGGCGTTAGCTGCAAACTGGAACCAGGCGACCGGACCTCGAACTACAG
CGATCTAAAGGTGGACATTTCGGGCGGCTATGTGCCCTACGGCGACTACA
GTACGCACTACAGTCCGCCTCCGCAATACCTGACCACCTGTTCGACGAAA
TCCAATGGCAGCTCGACCATTATGCAGAACAACCATCAGAACCAATTGCA
ACTACAGCAGCAGCAGCAACAGAGCCACCACCAGCACCACACACAGACGA
CGACCCTGCCGATGACCTTCCTGACCAACAGCAGCGGTGGCAGCTTGACT
GGCAGTATTATTGGATCCCGTGAAATTCGCCAGGACAACGGGCTGCCCAG
TCTGCAGTCGACCACCGCCTCGGTGGTTAGCTCATCGCCGAATGGCAGCT
GCAGCAATCAGAGCACCACTGCCGCCACCACCACCACCACCCACGTGGTG
GTGCCCAGCTCGATGGCCCTGAGTGTGGATCCCCGCTATAGCGCCATTTA
CGGCAATCCCTATCTTAGGTCCTCCAACTCGTCGCTGCTGCCGCCACCCA
CTGCCGTTGCAAGCTTTCTAGACCAT
BO28880.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rst-RB | 2295 | CG4125-PB | 1..2292 | 17..2308 | 11460 | 100 | Plus |
| rst-RA | 2295 | CG4125-PA | 1..2292 | 17..2308 | 11460 | 100 | Plus |
| kirre-RG | 2871 | CG3653-PG | 253..878 | 107..732 | 670 | 73.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rst-RB | 6251 | CG4125-RB | 539..2832 | 15..2308 | 11470 | 100 | Plus |
| rst-RA | 4818 | CG4125-RA | 539..2832 | 15..2308 | 11470 | 100 | Plus |
| kirre-RG | 4953 | CG3653-RG | 1969..2594 | 107..732 | 670 | 73.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2953818..2954530 | 2308..1596 | 3565 | 100 | Minus |
| X | 23542271 | X | 2954653..2955201 | 1595..1047 | 2745 | 100 | Minus |
| X | 23542271 | X | 2957461..2957957 | 511..15 | 2485 | 100 | Minus |
| X | 23542271 | X | 2955946..2956180 | 945..711 | 1175 | 100 | Minus |
| X | 23542271 | X | 2957053..2957259 | 716..510 | 1035 | 100 | Minus |
| X | 23542271 | X | 3129530..3130155 | 107..732 | 670 | 73.8 | Plus |
| X | 23542271 | X | 2955541..2955644 | 1046..943 | 520 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:42:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2544 | 1943..2188 | 173 | 56.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6879 | 1903..1989 | 171 | 67.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6771..6878 | 1928..2035 | 169 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6860 | 1898..2044 | 167 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6795 | 1924..1995 | 162 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6867..6966 | 1916..2015 | 158 | 66 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2384 | 1937..1996 | 156 | 73.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6847 | 1908..1996 | 154 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6896 | 1840..2004 | 154 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6797 | 1925..2001 | 148 | 67.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1041..1157 | 1898..2004 | 148 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1523..1635 | 1926..2036 | 146 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6837 | 1941..2057 | 146 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2745..2876 | 1922..2051 | 141 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2287..2442 | 1819..1988 | 140 | 60 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1057..1116 | 1930..1989 | 138 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2385..2539 | 1837..1995 | 137 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2403..2534 | 1903..2037 | 136 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6781..6862 | 1908..1990 | 133 | 63.9 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3230..3369 | 1894..2033 | 133 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2360..2446 | 1908..1995 | 131 | 62.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1072..1154 | 1908..1988 | 131 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2553..2665 | 1875..1986 | 129 | 60.5 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 905..1011 | 1886..1988 | 128 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1519..1574 | 1941..1996 | 118 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..2871 | 1903..1982 | 117 | 65.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1051..1113 | 1927..1989 | 117 | 65.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1087..1163 | 1908..1985 | 117 | 62.8 | Plus |
BO28880.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:38 Download gff for
BO28880.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rst-RA | 544..2830 | 22..2310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:18 Download gff for
BO28880.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rst-RA | 546..2832 | 22..2310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:46 Download gff for
BO28880.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rst-RA | 546..2832 | 22..2310 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:46 Download gff for
BO28880.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2953816..2954530 | 1596..2310 | 99 | <- | Minus |
| X | 2954653..2955201 | 1047..1595 | 100 | <- | Minus |
| X | 2955541..2955643 | 944..1046 | 100 | <- | Minus |
| X | 2955948..2956178 | 713..943 | 100 | <- | Minus |
| X | 2957057..2957257 | 512..712 | 100 | <- | Minus |
| X | 2957461..2957950 | 22..511 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:18 Download gff for
BO28880.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2847849..2848563 | 1596..2310 | 99 | <- | Minus |
| arm_X | 2848686..2849234 | 1047..1595 | 100 | <- | Minus |
| arm_X | 2849574..2849676 | 944..1046 | 100 | <- | Minus |
| arm_X | 2849981..2850211 | 713..943 | 100 | <- | Minus |
| arm_X | 2851090..2851290 | 512..712 | 100 | <- | Minus |
| arm_X | 2851494..2851983 | 22..511 | 100 | | Minus |
BO28880.pep Sequence
Translation from 16 to 2326
> BO28880.pep
MLHTMQLLLLATIVGMVRSSPYTSYQNQRFAMEPQDQTAVVGARVTLPCR
VINKQGTLQWTKDDFGLGTSRDLSGFERYAMVGSDEEGDYSLDIYPVMLD
DDARYQCQVSPGPEGQPAIRSTFAGLTVLVPPEAPKITQGDVIYATEDRK
VEIECVSVGGKPAAEITWIDGLGNVLTDNIEYTVIPLPDQRRFTAKSVLR
LTPKKEHHNTNFSCQAQNTADRTYRSAKIRVEVKYAPKVKVNVMGSLPGG
AGGSVGGAGGGSVHMSTGSRIVEHSQVRLECRADANPSDVRYRWFINDEP
IIGGQKTEMVIRNVTRKFHDAIVKCEVQNSVGKSEDSETLDISYAPSFRQ
RPQSMEADVGSVVSLTCEVDSNPQPEIVWIQHPSDRVVGTSTNLTFSVSN
ETAGRYYCKANVPGYAEISADAYVYLKGSPAIGSQRTQYGLVGDTARIEC
FASSVPRARHVSWTFNGQEISSESGHDYSILVDAVPGGVKSTLIIRDSQA
YHYGKYNCTVVNDYGNDVAEIQLQAKKSVSLLMTIVGGISVVAFLLVLTI
LVVVYIKCKKRTKLPPADVISEHQITKNGGVSCKLEPGDRTSNYSDLKVD
ISGGYVPYGDYSTHYSPPPQYLTTCSTKSNGSSTIMQNNHQNQLQLQQQQ
QQSHHQHHTQTTTLPMTFLTNSSGGSLTGSIIGSREIRQDNGLPSLQSTT
ASVVSSSPNGSCSNQSTTAATTTTTHVVVPSSMALSVDPRYSAIYGNPYL
RSSNSSLLPPPTAVASFLDH
BO28880.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:02:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rst-PB | 764 | CG4125-PB | 1..764 | 1..764 | 3969 | 100 | Plus |
| rst-PA | 764 | CG4125-PA | 1..764 | 1..764 | 3969 | 100 | Plus |
| kirre-PG | 956 | CG3653-PG | 82..821 | 28..760 | 1739 | 48.8 | Plus |
| kirre-PF | 956 | CG3653-PF | 82..821 | 28..760 | 1739 | 48.8 | Plus |
| kirre-PE | 956 | CG3653-PE | 82..821 | 28..760 | 1739 | 48.8 | Plus |
