BO28886.complete Sequence
1411 bp assembled on 2011-08-24
GenBank Submission: KX797613
> BO28886.complete
GAAGTTATCAGTCGACATGATCGCCGTGCTGTTGGACATATTCTGGATCC
CCATCGGGGGCTTCCTCTCATTTCTCATATTTATTTCCGCCATAAACAAA
TCAATCGGCGTCCGAAAAGCGTACGTGAACCTCCTCCTAAGGATATTCGA
GTATGGTCGAGTTAGTATAGAGACAGCATCCAAAGAAAACCAACACATTC
AAAATCCCAAGACTGACGACAAACAGGGAGTGCAACTAGTGGACGACGCC
GATTCCAAAGAAGGCACCAATGGAGCCACATTGATTACCAGGGACGCGGT
ACTCCTGCCCCAGCCACAGGAGCCCGCTCCAGAGAAGCCAGTTTCCTCCA
CAAAGGATGAAATCAATTTCGATTTTGAGAAATGCCTGGACTACGTAAAG
TCTGGCGTGGAGGCCATCATCGAGGACGATGTTACGTCGCGCTTCGAGGC
GGAGGAGCTCAAGAGCTGGAACATGCTGACACGCACCAATAGGCACTACG
AGTTCATTTCCTGGAAAATCACCTCCATCTGGGTGTTCGGCTTCTTCATC
CGCTACGTCATCCTGATGCCCCTCCGGGTATTGGTATGCTTCGTTGGTGT
TTTATTTGCAGTTTTATCAAGCTCCATTGTGGCTTGTTTACCTTTTCGAT
TTGTACGGCTTTCTCTAGCGAGCTTGTCATTCAAAATTACGTTCCGCCTT
ATTTCAAGTTCTATGTCCTCCTTTATCAAGTTCCACAATAAGCAATATAA
GCCCACAGTCTCTGGGTTCTGTGTAGCCAACCACACCTCTCCCTTGGATG
TGGCTATATTATCGACCGATTGTACCTACTCTTTGATTGGCCAACGCCAT
GGCGGCTTTTTGGGGGTGCTGCAACGAGCTCTGGCCCGCGCATCTCCCCA
CATTTGGTTTGAGCGCGGCGAGGCCAAGGATCGTCATTTGGTGGCCGAGC
GACTGAAGCAGCACGTGTCTGATCCGAACAACCCACCGATCCTTATCTTC
CCGGAGGGAACTTGCATCAACAACACGTCGGTCATGCAGTTCAAGAAGGG
CAGCTTCGAAGTTGGCGGCGTCATCTACCCGGTGGCCATTAAGTACGATC
CGAGGTTCGGCGACGCCTTCTGGAACAGCGCGAAGTACTCGATGATGCAG
TATCTGTACATGATGATGACCTCGTGGGCCATCGTGTGCGATGTGTGGTA
CCTGCCGCCGATGTACAGGCAGGAGGGAGAGTCGGCGATCGACTTCGCGA
ACCGCGTGAAGAGTGTCATCGCGAAGCAGGGAGGTTTGATTGATCTGGTC
TGGGACGGGCAGCTGAAGCGCATGAAGCCAAAGAAGGAGTGGAGGGAGAT
CCAGCAAGTCGAGTTTGCCAATCGGCTGAAGTCGGACTCCACCGCAAGCT
TTCTAGACCAT
BO28886.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:10:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3209-RC | 1380 | CG3209-PC | 1..1377 | 17..1393 | 6885 | 100 | Plus |
| CG3209-RD | 1614 | CG3209-PD | 1..819 | 17..835 | 4095 | 100 | Plus |
| CG3209-RB | 1377 | CG3209-PB | 1..584 | 17..600 | 2920 | 100 | Plus |
| CG3209-RD | 1614 | CG3209-PD | 1042..1611 | 824..1393 | 2820 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:10:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3209-RC | 1751 | CG3209-RC | 151..1527 | 17..1393 | 6885 | 100 | Plus |
| CG3209-RD | 1985 | CG3209-RD | 151..969 | 17..835 | 4095 | 100 | Plus |
| CG3209-RB | 1660 | CG3209-RB | 151..734 | 17..600 | 2920 | 100 | Plus |
| CG3209-RD | 1985 | CG3209-RD | 1192..1761 | 824..1393 | 2820 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:10:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24073028..24073328 | 1093..1393 | 1505 | 100 | Plus |
| 2R | 25286936 | 2R | 24072704..24072963 | 835..1094 | 1300 | 100 | Plus |
| 2R | 25286936 | 2R | 24069998..24070244 | 354..600 | 1235 | 100 | Plus |
| 2R | 25286936 | 2R | 24070768..24071004 | 599..835 | 1185 | 100 | Plus |
| 2R | 25286936 | 2R | 24069737..24069943 | 150..356 | 1035 | 100 | Plus |
| 2R | 25286936 | 2R | 24069200..24069334 | 17..151 | 675 | 100 | Plus |
| X | 23542271 | X | 20825153..20825296 | 986..1129 | 240 | 77.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:10:01 has no hits.
BO28886.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:14 Download gff for
BO28886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3209-RC | 291..1667 | 17..1395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:27 Download gff for
BO28886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3209-RC | 151..1527 | 17..1395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:41 Download gff for
BO28886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3209-RC | 151..1527 | 17..1395 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:41 Download gff for
BO28886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24070768..24071004 | 599..835 | 100 | -> | Plus |
| 2R | 24072705..24072961 | 836..1092 | 100 | -> | Plus |
| 2R | 24069200..24069334 | 17..151 | 100 | -> | Plus |
| 2R | 24069739..24069942 | 152..355 | 100 | -> | Plus |
| 2R | 24070000..24070242 | 356..598 | 100 | -> | Plus |
| 2R | 24073028..24073328 | 1093..1395 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:27 Download gff for
BO28886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19960551..19960851 | 1093..1395 | 99 | | Plus |
| arm_2R | 19958291..19958527 | 599..835 | 100 | -> | Plus |
| arm_2R | 19960228..19960484 | 836..1092 | 100 | -> | Plus |
| arm_2R | 19956723..19956857 | 17..151 | 100 | -> | Plus |
| arm_2R | 19957262..19957465 | 152..355 | 100 | -> | Plus |
| arm_2R | 19957523..19957765 | 356..598 | 100 | -> | Plus |
BO28886.pep Sequence
Translation from 16 to 1411
> BO28886.pep
MIAVLLDIFWIPIGGFLSFLIFISAINKSIGVRKAYVNLLLRIFEYGRVS
IETASKENQHIQNPKTDDKQGVQLVDDADSKEGTNGATLITRDAVLLPQP
QEPAPEKPVSSTKDEINFDFEKCLDYVKSGVEAIIEDDVTSRFEAEELKS
WNMLTRTNRHYEFISWKITSIWVFGFFIRYVILMPLRVLVCFVGVLFAVL
SSSIVACLPFRFVRLSLASLSFKITFRLISSSMSSFIKFHNKQYKPTVSG
FCVANHTSPLDVAILSTDCTYSLIGQRHGGFLGVLQRALARASPHIWFER
GEAKDRHLVAERLKQHVSDPNNPPILIFPEGTCINNTSVMQFKKGSFEVG
GVIYPVAIKYDPRFGDAFWNSAKYSMMQYLYMMMTSWAIVCDVWYLPPMY
RQEGESAIDFANRVKSVIAKQGGLIDLVWDGQLKRMKPKKEWREIQQVEF
ANRLKSDSTASFLDH
BO28886.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:20:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3209-PC | 459 | CG3209-PC | 1..459 | 1..459 | 2393 | 100 | Plus |
| CG3209-PB | 458 | CG3209-PB | 1..458 | 1..459 | 2133 | 89.3 | Plus |
| CG3209-PD | 537 | CG3209-PD | 1..274 | 1..274 | 1398 | 99.6 | Plus |
| CG3209-PD | 537 | CG3209-PD | 305..537 | 226..459 | 1134 | 90.6 | Plus |
| CG3209-PE | 380 | CG3209-PE | 1..195 | 1..195 | 1004 | 99.5 | Plus |
| CG3209-PE | 380 | CG3209-PE | 195..380 | 274..459 | 998 | 100 | Plus |
| CG15450-PA | 407 | CG15450-PA | 75..407 | 113..443 | 848 | 45.8 | Plus |
