BO28901.complete Sequence
2392 bp assembled on 2011-09-20
GenBank Submission: KX795545
> BO28901.complete
GAAGTTATCAGTCGACATGCCCATGGAGGAGTTTCACGCTCGCGGCTGGT
TCGAGGAGCCCAAGACGCAGAATTCGGTGGCTCATGGCATTGGGACGCAG
AATATGTTGGAGCTGACCCCGCATTCGGGTCAGAAGCCTTTTAAGAAGCT
ATTCGACTGGGGCGTGCTCTTCCCATATGTTGCCCAGGTGGTGCGCAGCG
AGAAGTTCGAGTACCGACAGGTCACCGAGATCGTGCACAACGATGCTGTA
CTGAAGCATGCAATTAAACAGGCCGCCGAGCAGACGCTAAGGGAGCAGAG
ATATGCTAAAAATGGTCATCGTCTGCTCACGCGCAGTGCTAGTGGAGATC
AGGAGGCGCAGGAGGAGGAGGACGAGAAGAGGGGTATATCCTATCAGGCC
ATTCTGCGTAAGCAGGAGCAGCGCGCCATTAGCATACTGAAGGACATGGG
CTCCACTCTGAACAATGGCCTTTTGGCCTTCACTTCCTGGATCCTGTACA
AGTTGCTGCCCTGCTTCCTCTCCGGAGTCGTTACGAACACGAAGCAGATC
GAGATGCTCAAAACAGCCACAGAGCGTTCGCCGGGCACTCCGCTGATATT
TGTTCCGCTGCATCGCAGCCACTTGGACTACATCATGGTCACATGGATAC
TCACGAACAACGATATACGCAGTCCTCTGGTAGCCGCTGGCAACAACCTG
CAAATTCCGGTCTTTGGTGGGCTCCTACGTGGTTTGGGTGCTTTCTTCAT
CAAACGCAAGATTGATCCTGTGGAGGGCAAGAAGGACGTGCTTTATCGCG
CTGCTCTACACCTGTATCTGACCCACGCCTTGAAGCAGGGCCACAACGTC
GAGTTCTTCATCGAGGGCGGACGAACGCGCACTGGCAAGCCGTGCATGCC
CAAGGGCGGCATTCTTTCTGTGATTGTGAACGCCTTCATGGACGGCAGCA
TACCGGACGCACTGCTGGTACCCGTTTCCGTAAACTACGAGCGTCTCGTC
GACGGAAACTTTGTGCGCGAACAAAAGGGCGAGAAGAAGATACCCGAATC
ATTCGGCAAGGCCATTTCGGGCATTTGGAAGGCCCTGAAATCAAACTACG
GCCTCATGCGCATCGACTTTAACGAGCCCTACTCCATACGTGAGCTGGTC
AATTCGTACAACAAGATAGCCCGAGAAGATGGAAACATTGCCAAGGTCTA
CAAGCCATCTGCCAGGGTCCTACAGCACAATCAGTCCACCTCCTCCTTGT
ACGGCACCGATGTTGTGTGCGAGGAGCACCGCAATCTCATCGAAAGCATC
TCGCGCCAGGTGGTCTTTGACTGCGCAGCAGCCACCTCTGTGATGTCCAC
CAATGCGTTAGCCTTTTTGCTGCTCACCCGCTTTAGGAACGGTGCCGAGG
AGCAGATTCTGTCGGAGGCTCTGGACGACTTGCGAAACTCGTTGTCGGGC
TGCAAGGACATTGGTTTTTCCGGGGAATCCTCGCAAATTGTGGCATATGC
CTGTGACCTACTCGGCTCAGGTCTTGTGACTCGCTCTCGGGATGAGAACG
GGCGTTTGGTGATTAAGGCTGTGAATTCAGTGGAAAGCTTTATTGAGCTG
GCTTACTATTCGAACATGCTGACGCCGCACTTTGCCCTCAGCTCGATATT
GTTGACCACCTTCCACTCACTGCTTCCGGAAACGGAGAATAAGAAAGAAG
CCGCCGTGTCGCGCAAAAAGCTGATAGACACCGCGCTGGAAAACTGCCAG
ATCTATCGCTACGAATTTATTCTGAACAAACCGACGCAGGTGCTGGAAAA
TTTGCTGTACCAGCAGTTGGACGACCTCTTGATTAGTGGTTGCGTTTTGA
CCGAAAAGCTCCATGACGATTTGCCGAATGGCGCTGAGGGCAGGCGCTTG
GCCAACGTCCTGGCAGAGTGCCTGGACGAGGACGGCTACGAAGACGTGCG
CGATGGCGAGGCGGATGAGCCCAAACTGCTGTTCGCCAGCGAAACCCCGT
CGCAGCAGCGCTACATTTGCGAGGTGCTGGCGCCCTTCGCCTGGACGTAT
GTGACGGTGGCGCAGTCCCTGCAAATACTGCACAAGAACTCCATGCTGGA
GTCTGAATTTATAAGCTTTGTGATTAACGATCTGAGCAGCAAGGTCAAGC
GCGGCAGCTGCATCTATGCCGAAAGCATATCCACCGACTCCGTGCGCAAC
TGCCTGAAGCTGTTGGAGAAATGGTCTGTGATCGAGGTTTGCAACCAGCA
GGGCATGCGCCTGATCTCACTCAACACGCTCTACGAGATGTCTCGTGAGT
CGCTCAACTCGATCGTGAAGAAGATCGACGCAATTGTACCAAAATTCAAC
TCGGGCTACTTCAGTGTAACGCCTGCAAGCTTTCTAGACCAT
BO28901.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:47:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mino-RC | 2361 | CG5508-PC | 1..2358 | 17..2374 | 11790 | 100 | Plus |
| mino-RE | 2553 | CG5508-PE | 232..2550 | 56..2374 | 11595 | 100 | Plus |
| mino-RA | 2553 | CG5508-PA | 232..2550 | 56..2374 | 11595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:47:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mino-RC | 2903 | CG5508-RC | 240..2597 | 17..2374 | 11790 | 100 | Plus |
| mino-RB | 2687 | CG5508-RB | 167..2486 | 55..2374 | 11600 | 100 | Plus |
| mino-RE | 3176 | CG5508-RE | 448..2766 | 56..2374 | 11595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:47:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27930202..27931199 | 219..1216 | 4990 | 100 | Plus |
| 3R | 32079331 | 3R | 27931686..27932025 | 1519..1858 | 1700 | 100 | Plus |
| 3R | 32079331 | 3R | 27932088..27932399 | 1857..2168 | 1560 | 100 | Plus |
| 3R | 32079331 | 3R | 27931317..27931626 | 1213..1522 | 1550 | 100 | Plus |
| 3R | 32079331 | 3R | 27932461..27932667 | 2168..2374 | 1035 | 100 | Plus |
| 3R | 32079331 | 3R | 27929979..27930147 | 54..222 | 845 | 100 | Plus |
| 3R | 32079331 | 3R | 27929858..27929897 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:47:52 has no hits.
BO28901.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:55:35 Download gff for
BO28901.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5508-RC | 240..2597 | 17..2376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:37 Download gff for
BO28901.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5508-RC | 240..2597 | 17..2376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:51 Download gff for
BO28901.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mino-RC | 240..2597 | 17..2376 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:51 Download gff for
BO28901.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27931688..27932025 | 1521..1858 | 100 | -> | Plus |
| 3R | 27932090..27932399 | 1859..2168 | 100 | -> | Plus |
| 3R | 27929981..27930145 | 56..220 | 100 | -> | Plus |
| 3R | 27932462..27932667 | 2169..2376 | 99 | | Plus |
| 3R | 27929858..27929896 | 17..55 | 100 | -> | Plus |
| 3R | 27930204..27931198 | 221..1215 | 100 | -> | Plus |
| 3R | 27931320..27931624 | 1216..1520 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:37 Download gff for
BO28901.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23755580..23755618 | 17..55 | 100 | -> | Plus |
| arm_3R | 23755703..23755867 | 56..220 | 100 | -> | Plus |
| arm_3R | 23755926..23756920 | 221..1215 | 100 | -> | Plus |
| arm_3R | 23757042..23757346 | 1216..1520 | 100 | -> | Plus |
| arm_3R | 23757410..23757747 | 1521..1858 | 100 | -> | Plus |
| arm_3R | 23757812..23758121 | 1859..2168 | 100 | -> | Plus |
| arm_3R | 23758184..23758389 | 2169..2376 | 99 | | Plus |
BO28901.pep Sequence
Translation from 16 to 2392
> BO28901.pep
MPMEEFHARGWFEEPKTQNSVAHGIGTQNMLELTPHSGQKPFKKLFDWGV
LFPYVAQVVRSEKFEYRQVTEIVHNDAVLKHAIKQAAEQTLREQRYAKNG
HRLLTRSASGDQEAQEEEDEKRGISYQAILRKQEQRAISILKDMGSTLNN
GLLAFTSWILYKLLPCFLSGVVTNTKQIEMLKTATERSPGTPLIFVPLHR
SHLDYIMVTWILTNNDIRSPLVAAGNNLQIPVFGGLLRGLGAFFIKRKID
PVEGKKDVLYRAALHLYLTHALKQGHNVEFFIEGGRTRTGKPCMPKGGIL
SVIVNAFMDGSIPDALLVPVSVNYERLVDGNFVREQKGEKKIPESFGKAI
SGIWKALKSNYGLMRIDFNEPYSIRELVNSYNKIAREDGNIAKVYKPSAR
VLQHNQSTSSLYGTDVVCEEHRNLIESISRQVVFDCAAATSVMSTNALAF
LLLTRFRNGAEEQILSEALDDLRNSLSGCKDIGFSGESSQIVAYACDLLG
SGLVTRSRDENGRLVIKAVNSVESFIELAYYSNMLTPHFALSSILLTTFH
SLLPETENKKEAAVSRKKLIDTALENCQIYRYEFILNKPTQVLENLLYQQ
LDDLLISGCVLTEKLHDDLPNGAEGRRLANVLAECLDEDGYEDVRDGEAD
EPKLLFASETPSQQRYICEVLAPFAWTYVTVAQSLQILHKNSMLESEFIS
FVINDLSSKVKRGSCIYAESISTDSVRNCLKLLEKWSVIEVCNQQGMRLI
SLNTLYEMSRESLNSIVKKIDAIVPKFNSGYFSVTPASFLDH
BO28901.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:10:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mino-PC | 786 | CG5508-PC | 1..786 | 1..786 | 4028 | 100 | Plus |
| mino-PE | 850 | CG5508-PE | 78..850 | 14..786 | 3950 | 100 | Plus |
| mino-PA | 850 | CG5508-PA | 78..850 | 14..786 | 3950 | 100 | Plus |
| mino-PB | 757 | CG5508-PB | 1..757 | 30..786 | 3865 | 100 | Plus |
| Dhap-at-PB | 724 | CG4625-PB | 95..412 | 130..433 | 297 | 27.6 | Plus |
