BO28902.complete Sequence
1195 bp assembled on 2011-08-24
GenBank Submission: KX797625
> BO28902.complete
GAAGTTATCAGTCGACATGTGCGACGTGCTCCTCCCATGCGAGTATAATC
CAAAGGAATGTCCGAGTCCTGCGGCGGAGAAGAGCCGCCTCTTCACGATC
CTTTTGCTCTACTGTTGGCAGCGGGAGTACGATAAGAGACCCTACCGCCA
GTTCCAGTTCAAGCGACTCACGTTCGAGGAACGGATTGGTCGGAGGTACC
ACTGCATCCGTGACTTGCGGATCATCGTTAACTATCTGCTGCGGCGTCCC
CAGTTGTCTGTCCAAATTTCCAGCTTGGTTGTCAGCAACTGGGATGCGGG
CTTGCTGAAGGACTTTGTCCGCTCGCTGCTCCCCGTTTGGTACATCGAGC
TGCGACTGATGCGGTTTCCTCGGGAGTTCTTCGTGATGCTGCGTCTCAAT
GCGGCCAAGATGAATGTTAGCCAGCTCAGCTTGGAAGGAACACCCCTCAC
CGATGAAGACGTGCGCATCCTGCGAGAATTCCTGCTGGTAAGCAAGACTC
TGCGCAGGCTCAACGTGTCCAGCTGCAGCCTGACACAGTTCAACTTCGCT
CTGATCGCGGACGGAGTGTATAAGTCGCCTGGAGTGCGACGCTTGAGCGC
CAACCGGCTGCTGGGGATGAGCCTCAGCCTGGACACGGAGAAAATTTCAT
CCGTGCTGAGCTCGCTGCTGATGCAGAATACACTCTGGGCTCTTTCGCTG
GAGCACTGCGAACTGACCGCCCAGGACATGATTCCCATTGCCGAGCACCT
GGCACGGACCAACTCGAAATTTCGGCGCCTGCGAATCGCCTGCAACAAGA
TCGGTCCGGATGGAGCCTTCTTTCTGCTGCGTGGAATGTCCATGGGTGGC
AATCTGGAGTTGCTGGACCTGAGCTACTGCTCGATTGGTACGCACGGCGG
CGAGTGGGTGGCCAAGTACCTGGCCTCGTGCCGCAGACTGCAGGTCCTGC
ACTTGAACTACAACGACATGGGTCCGACGGCAGTGAATCTCATCCTTCTG
GCCATGAAGAAACAGTGCAAGCTGGAAAAACTAACCTTGTATGGCAACCA
CTTTGACTCGCGTACCGCGATGATAGTGCGTCGCTTGCTGGATGCCGAGG
TAGTACTCCACTCCGAGCTGGACATCAGTTACACATACGACGAGGCACTG
CAGGATTACAGAGTGGTGCCTTGGCGTGCAAGCTTTCTAGACCAT
BO28902.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:56:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8197-RB | 1164 | CG8197-PB | 1..1161 | 17..1177 | 5805 | 100 | Plus |
| CG8197-RA | 1164 | CG8197-PA | 1..1161 | 17..1177 | 5805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:56:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8197-RB | 1390 | CG8197-RB | 65..1225 | 17..1177 | 5805 | 100 | Plus |
| CG8197-RA | 1288 | CG8197-RA | 65..1225 | 17..1177 | 5805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:56:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9060626..9061367 | 1177..436 | 3710 | 100 | Minus |
| 2R | 25286936 | 2R | 9061439..9061860 | 438..17 | 2110 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:56:37 has no hits.
BO28902.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:53 Download gff for
BO28902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8197-RA | 65..1225 | 17..1179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:44 Download gff for
BO28902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8197-RA | 65..1225 | 17..1179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:41 Download gff for
BO28902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8197-RA | 65..1225 | 17..1179 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:41 Download gff for
BO28902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9060624..9061365 | 438..1179 | 99 | <- | Minus |
| 2R | 9061440..9061860 | 17..437 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:44 Download gff for
BO28902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4948129..4948870 | 438..1179 | 99 | <- | Minus |
| arm_2R | 4948945..4949365 | 17..437 | 100 | | Minus |
BO28902.pep Sequence
Translation from 16 to 1195
> BO28902.pep
MCDVLLPCEYNPKECPSPAAEKSRLFTILLLYCWQREYDKRPYRQFQFKR
LTFEERIGRRYHCIRDLRIIVNYLLRRPQLSVQISSLVVSNWDAGLLKDF
VRSLLPVWYIELRLMRFPREFFVMLRLNAAKMNVSQLSLEGTPLTDEDVR
ILREFLLVSKTLRRLNVSSCSLTQFNFALIADGVYKSPGVRRLSANRLLG
MSLSLDTEKISSVLSSLLMQNTLWALSLEHCELTAQDMIPIAEHLARTNS
KFRRLRIACNKIGPDGAFFLLRGMSMGGNLELLDLSYCSIGTHGGEWVAK
YLASCRRLQVLHLNYNDMGPTAVNLILLAMKKQCKLEKLTLYGNHFDSRT
AMIVRRLLDAEVVLHSELDISYTYDEALQDYRVVPWRASFLDH
BO28902.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:22:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8197-PB | 387 | CG8197-PB | 1..387 | 1..387 | 2002 | 100 | Plus |
| CG8197-PA | 387 | CG8197-PA | 1..387 | 1..387 | 2002 | 100 | Plus |
