BO28906.complete Sequence
1069 bp assembled on 2011-08-24
GenBank Submission: KX798186
> BO28906.complete
GAAGTTATCAGTCGACATGGCGGAAAGCGCTTATACCGATGCGCCGTACC
TCAACCGCGTACCGACAGTTGGTGTGATGTGCATCGATATCGCCACGCAA
CTGCAGCAGAACTTTAGTGGTGCATATCACAGCTATTTGGCTGCATCCTA
TGTCAAATTTTTGGAGGCATCCGGTGCGCATGTGGTTCCCATTTGGATCG
GCCGAGAACGAGCTTACTATGCGTTGATGATGAGCCAGTTAAATGGCATT
CTTCTGCCAGGTGGAGCCGTGTTCATCGACGAGGCTGATAGGCAAGCCAA
TCCGGATGTGACCAGCGATTGCGTCCGGAGTGCCGAGCTCATCTACCAAT
TGGCTATGGAGCGTAATATGCGGGCGAAGAAGTTGGATGATCGTGGCGCA
TACTTTCCCGTTTGGGGAACTTGTCTTGGCTTCCAGTTGATCCTTATTCA
CGCTGCCGAAGCACCGAATGTTCGAATCGCCTGTCAGCCCATGAGGGAGG
CGATGCCAGTTACTCTGACCGATGACTATCAACAATCACAACTGCTTGGA
AGTCTGCCGAAATCGGTTGCCGATGAGATGGAGAAGCACCCATTTGCCTG
CCATCAGCATCGGTATTGCATCACTAAAGAGAGTTTGGAATCCTATGGTC
TAGCTAAGGATTGGCATCCCCTGGCCACTCAGAAGGACACTTCAGGACTG
GAATTCATCACGATTGTCGAGCACAGGCGTTTTCCCATCTTTGGATGTCA
GTTTCATCCTGAGCGCGCTGCATTTGAGCAGCTTTTCAACTCACCGGACA
AATGTTACATGGCGCATTCTCGCATGGGTATCGATTTGTCCCAAATCTTT
GGCAGTCGGTTTGTTGACTTCTGCCGCCGCAACAACAATCAGTTCGAAAG
TGACAAATTAAAAACCAGACATCTCATTTGGAACTGGCAGCCCGTTTTCT
CTGGCAAGTTCAAGGGCTCCAACTGGCAGCAGTGCTATCTATTTGAGAAG
AACGTGGACTATTCGGAAGAGCCGGATGATTCTGAGGAGCTTCGCTCATC
TGCAAGCTTTCTAGACCAT
BO28906.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:57:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)72Dr-RA | 1038 | CG32154-PA | 1..1035 | 17..1051 | 5175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:57:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)72Dr-RA | 1138 | CG32154-RA | 36..1070 | 17..1051 | 5175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:57:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16238538..16239394 | 195..1051 | 4285 | 100 | Plus |
3L | 28110227 | 3L | 16237758..16237937 | 17..196 | 900 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:57:03 has no hits.
BO28906.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:53 Download gff for
BO28906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32154-RA | 1..1035 | 17..1053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:59 Download gff for
BO28906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)72Dr-RA | 36..1070 | 17..1053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:53 Download gff for
BO28906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)72Dr-RA | 36..1070 | 17..1053 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:53 Download gff for
BO28906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16238539..16239394 | 196..1053 | 99 | | Plus |
3L | 16237758..16237936 | 17..195 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:59 Download gff for
BO28906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16230858..16231036 | 17..195 | 100 | -> | Plus |
arm_3L | 16231639..16232494 | 196..1053 | 99 | | Plus |
BO28906.pep Sequence
Translation from 16 to 1069
> BO28906.pep
MAESAYTDAPYLNRVPTVGVMCIDIATQLQQNFSGAYHSYLAASYVKFLE
ASGAHVVPIWIGRERAYYALMMSQLNGILLPGGAVFIDEADRQANPDVTS
DCVRSAELIYQLAMERNMRAKKLDDRGAYFPVWGTCLGFQLILIHAAEAP
NVRIACQPMREAMPVTLTDDYQQSQLLGSLPKSVADEMEKHPFACHQHRY
CITKESLESYGLAKDWHPLATQKDTSGLEFITIVEHRRFPIFGCQFHPER
AAFEQLFNSPDKCYMAHSRMGIDLSQIFGSRFVDFCRRNNNQFESDKLKT
RHLIWNWQPVFSGKFKGSNWQQCYLFEKNVDYSEEPDDSEELRSSASFLD
H
BO28906.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:22:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)72Dr-PA | 345 | CG32154-PA | 1..345 | 1..345 | 1851 | 100 | Plus |
l(3)72Dp-PA | 373 | CG32155-PA | 26..331 | 16..341 | 516 | 34.7 | Plus |