BO28909.complete Sequence
859 bp assembled on 2011-08-25
GenBank Submission: KX798040
> BO28909.complete
GAAGTTATCAGTCGACATGGAAAGATTTGGTATTCCACGTGGTAAGCGTC
CCCGAGTCCAAGTTTCATTGGACGACAAGGAGCGAGCCATAGCCCGAATC
CGAGGTGGTGAAACCAAGGCCGGAATATCACGCGAATTGGGTGTTCCGGA
GTCTACGGTTCGCGGTTGGGTGAAACGAGCTGAGCAGCGGTTGGCCCGAG
AGACAACTAGCCAAACGGGTTCTGCCAACTATTCCACAATCCTGGCCATG
ACCCTAGCGAAACCGCAAGTTACCATCAGCACAAAATCGTCGGCTTCGTC
TGTCATTTCTAAATCATCATACTCATCGCCACCGCTGGATTTGAAACCCC
TGAAACAGCCCCAGAAACGAAACATTAATGGTCATCCGGTAACGTGCACC
CAGGATCCAGTCGAGGATTCAGCAGCTACATCCATCCCCATCCCCGTTCC
GATTCCGGTGCCCCTTCCTGTGCCGCCAATGGTTTCGCCTGACAGTGAGC
AACAGATGAGCGCTTGGTTGCATATATTCAATGCGGGAATTCTGAACTTC
ACTCTGATTGCCTCCGCTGCAGTGCTTCAGGCTCGCTCGCGTGGTTTGGC
GGATCGCCTGCCGTTGTGGCAAATTATCACGGATTTTGTTGATGAAGCCG
AACGTAATGTGAATGCCAACGGGGGTTGGTACCTCGAGGGACAGCCGGCG
ACAGGACACATGAGTGCCAGGCAACGGCCAGTCCGAGTGCCCACGAAGGT
GCATTCATATCGCAGGAACTTGAAGGCACCACCGGCTCATATTACCGCCG
AAGATGACGAAGACTCCTACACGGACGCTGATGTGCCACACGCAAGCTTT
CTAGACCAT
BO28909.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:54:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30401-RC | 828 | CG30401-PC | 1..825 | 17..841 | 4125 | 100 | Plus |
| CG30401-RA | 828 | CG30401-PA | 1..825 | 17..841 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:54:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30401-RC | 1188 | CG30401-RC | 225..1049 | 17..841 | 4125 | 100 | Plus |
| CG30401-RA | 1258 | CG30401-RA | 295..1119 | 17..841 | 4125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:54:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21985765..21986395 | 841..211 | 3140 | 99.8 | Minus |
| 2R | 25286936 | 2R | 21986441..21986644 | 220..17 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:54:10 has no hits.
BO28909.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-25 14:27:36 Download gff for
BO28909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30401-RA | 1..825 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:18 Download gff for
BO28909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30401-RA | 173..997 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:26 Download gff for
BO28909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30401-RA | 295..1119 | 17..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:26 Download gff for
BO28909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21985762..21986387 | 219..843 | 99 | <- | Minus |
| 2R | 21986443..21986644 | 17..218 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:18 Download gff for
BO28909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17873267..17873892 | 219..843 | 99 | <- | Minus |
| arm_2R | 17873948..17874149 | 17..218 | 100 | | Minus |
BO28909.pep Sequence
Translation from 16 to 859
> BO28909.pep
MERFGIPRGKRPRVQVSLDDKERAIARIRGGETKAGISRELGVPESTVRG
WVKRAEQRLARETTSQTGSANYSTILAMTLAKPQVTISTKSSASSVISKS
SYSSPPLDLKPLKQPQKRNINGHPVTCTQDPVEDSAATSIPIPVPIPVPL
PVPPMVSPDSEQQMSAWLHIFNAGILNFTLIASAAVLQARSRGLADRLPL
WQIITDFVDEAERNVNANGGWYLEGQPATGHMSARQRPVRVPTKVHSYRR
NLKAPPAHITAEDDEDSYTDADVPHASFLDH
BO28909.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:53:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30401-PC | 275 | CG30401-PC | 1..275 | 1..275 | 1418 | 100 | Plus |
| CG30401-PA | 275 | CG30401-PA | 1..275 | 1..275 | 1418 | 100 | Plus |
| danr-PA | 419 | CG13651-PA | 16..66 | 8..59 | 156 | 61.5 | Plus |
