BO28910.complete Sequence
745 bp assembled on 2011-09-14
GenBank Submission: KX799982
> BO28910.complete
GAAGTTATCAGTCGACATGAAGCCAATAATGGAAACGAATATACAGGCAT
CCATTTGGAACAAGAGATTCGAATCGACGATGATGAGTTCTTCCGAGCAA
AGTTTTGCCAAGTCCAATGGGACTAAAAAGAAGACTGTGACCTATTCACG
TTTCATCCGCACCGAACGTGTCGCAGACGGACCGACCAATGCGGTGCAAA
AGAAGACTGTGTTCTTTTCGCGATTCGACCGCACCGCTCGCGCCGAAGAG
GACCTAACCCGTCAATTGGCCAGCGTGTCCTTAAAACCAAAACAGCCTGT
GGCTTCCACCTCGAATGAGCAGTTTTTTGCCAGCAACCTGCATTACTATC
CCCATCTGCCCCAGCCAACTGCGGTGGGCCACTACCAGACCTATGCCGAA
ATCAAGAGCCTCTGGTTGAAGGGTCATTTCTCCCAAGCTTGTAACCCCAC
CTCGCGGTCGATGCAACCGCCTCGTCGTATTTCTATCACCAACGAGTTCC
CGGATGATCAACCGAAGCCAGCTCCCAAACGCCGCTACTCGCTTGTCCGC
CGCAACTCGATTAACCTCCCAATTGGGTCCAATTTTGCTATGCCCGTGCT
GATGGAGGAGGAGAAGGAGGAGGATGAAGTGAAGGATCTAAATGAGAACA
GCGGCTCCACCAAGCCAGCTACATCGACCTCGAAAGGCGCAATCCCGAAG
CAGCCCAAGAAGTTCGCCTTAACCTTCGCAAGCTTTCTAGACCAT
BO28910.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:21:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14811-RB | 714 | CG14811-PB | 1..711 | 17..727 | 3555 | 100 | Plus |
| CG14810-RB | 606 | CG14810-PB | 1..258 | 29..286 | 690 | 84.5 | Plus |
| CG14810-RA | 609 | CG14810-PA | 1..261 | 29..286 | 625 | 83.5 | Plus |
| CG14810-RB | 606 | CG14810-PB | 269..431 | 462..624 | 530 | 88.3 | Plus |
| CG14810-RB | 606 | CG14810-PB | 491..603 | 615..727 | 355 | 87.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:21:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14811-RB | 849 | CG14811-RB | 105..815 | 17..727 | 3555 | 100 | Plus |
| CG14810-RB | 717 | CG14810-RB | 55..321 | 20..286 | 705 | 84.3 | Plus |
| CG14810-RA | 720 | CG14810-RA | 55..324 | 20..286 | 640 | 83.3 | Plus |
| CG14810-RB | 717 | CG14810-RB | 332..494 | 462..624 | 530 | 88.3 | Plus |
| CG14810-RB | 717 | CG14810-RB | 554..666 | 615..727 | 355 | 87.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:21:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1821503..1822172 | 727..58 | 3350 | 100 | Minus |
| X | 23542271 | X | 1819891..1820119 | 286..58 | 605 | 84.3 | Minus |
| X | 23542271 | X | 1819718..1819880 | 624..462 | 530 | 88.3 | Minus |
| X | 23542271 | X | 1819546..1819658 | 727..615 | 355 | 87.6 | Minus |
| X | 23542271 | X | 1822236..1822277 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:21:39 has no hits.
BO28910.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-14 11:59:46 Download gff for
BO28910.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14811-RA | 1..648 | 80..729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:13:04 Download gff for
BO28910.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14811-RB | 105..815 | 17..729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:02 Download gff for
BO28910.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14811-RB | 105..815 | 17..729 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:02 Download gff for
BO28910.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1821501..1822171 | 59..729 | 99 | <- | Minus |
| X | 1822236..1822277 | 17..58 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:13:04 Download gff for
BO28910.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1715534..1716204 | 59..729 | 99 | <- | Minus |
| arm_X | 1716269..1716310 | 17..58 | 100 | | Minus |
BO28910.pep Sequence
Translation from 16 to 745
> BO28910.pep
MKPIMETNIQASIWNKRFESTMMSSSEQSFAKSNGTKKKTVTYSRFIRTE
RVADGPTNAVQKKTVFFSRFDRTARAEEDLTRQLASVSLKPKQPVASTSN
EQFFASNLHYYPHLPQPTAVGHYQTYAEIKSLWLKGHFSQACNPTSRSMQ
PPRRISITNEFPDDQPKPAPKRRYSLVRRNSINLPIGSNFAMPVLMEEEK
EEDEVKDLNENSGSTKPATSTSKGAIPKQPKKFALTFASFLDH
BO28910.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:15:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14811-PB | 237 | CG14811-PB | 1..237 | 1..237 | 1228 | 100 | Plus |
| CG14810-PB | 201 | CG14810-PB | 1..201 | 5..237 | 499 | 48.4 | Plus |
| CG14810-PA | 202 | CG14810-PA | 1..202 | 5..237 | 487 | 48.2 | Plus |
