BO28912.complete Sequence
577 bp assembled on 2011-08-24
GenBank Submission: KX797118
> BO28912.complete
GAAGTTATCAGTCGACATGATCAAAATGGACCCGAAATCCCACCAAAAGC
TCTTCAAGGAAATGGCAGAAGTCGTGTCCAATTCCAGCGATGACGGGGAG
AAGTTGCTAACCAAAAACTCTAGCAACACCATCGAGAAGTCCGAGGAAGT
CTGCAAGGAGCGCCCCGAAGCTGTGGAGCAGATGCGCATCGATGTCAATA
ACTCACTTGAGGACACGAACATGAATGCGGTGGAATCAGAAGCTCAAAAG
AATATCGCCGGCCTTGATGAGGACCTTATCATGGAAGACTTCGGCGTCGA
GGTCGTCCCGTTCCACGATCCCTGGTCCAAGCTATTGATAAAGCACCCCG
TGCGCAACAAAAGGTGCGGCCATATCTACGACCGCGAAACGGTTTTAATG
ATCATCAAGGACAACATTGGCATCCTATGCCCGGTGCGCGACTGTCCCAA
CTTGTCCGACATCAAGTTAGAGCACCTGGTCAAGGACCCCGACGTGGAGC
AGGAGTTGCAAAAGCGCAAGTCCGACAAGATCCAGAATGAAACTTCCTCG
GATGAGGACGCAAGCTTTCTAGACCAT
BO28912.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:56:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42300-RA | 546 | CG42300-PA | 1..543 | 17..559 | 2715 | 100 | Plus |
| CG42299-RA | 549 | CG42299-PA | 1..546 | 17..559 | 2575 | 98.5 | Plus |
| cerv-RD | 693 | CG15645-PD | 363..673 | 250..560 | 745 | 82.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:56:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42300-RA | 726 | CG42300-RA | 71..613 | 17..559 | 2715 | 100 | Plus |
| CG42299-RA | 679 | CG42299-RA | 21..566 | 17..559 | 2575 | 98.5 | Plus |
| cerv-RD | 1141 | CG15645-RD | 645..955 | 250..560 | 745 | 82.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:56:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15555366..15555855 | 559..70 | 2450 | 100 | Minus |
| X | 23542271 | X | 15575060..15575552 | 559..70 | 2325 | 98.6 | Minus |
| X | 23542271 | X | 15577172..15577482 | 560..250 | 745 | 82.6 | Minus |
| 3L | 28110227 | 3L | 17479760..17480055 | 265..560 | 565 | 79.4 | Plus |
| X | 23542271 | X | 15577548..15577642 | 205..111 | 385 | 93.7 | Minus |
| X | 23542271 | X | 15555921..15555975 | 71..17 | 275 | 100 | Minus |
| 3L | 28110227 | 3L | 17479577..17479663 | 112..198 | 270 | 87.4 | Plus |
| X | 23542271 | X | 15575609..15575663 | 71..17 | 260 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:56:10 has no hits.
BO28912.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:52 Download gff for
BO28912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42300-RA | 37..579 | 17..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:30 Download gff for
BO28912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42300-RA | 71..613 | 17..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:30 Download gff for
BO28912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42300-RA | 71..613 | 17..561 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:30 Download gff for
BO28912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15555364..15555853 | 72..561 | 99 | <- | Minus |
| X | 15555921..15555975 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:30 Download gff for
BO28912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15449397..15449886 | 72..561 | 99 | <- | Minus |
| arm_X | 15449954..15450008 | 17..71 | 100 | | Minus |
BO28912.pep Sequence
Translation from 16 to 577
> BO28912.pep
MIKMDPKSHQKLFKEMAEVVSNSSDDGEKLLTKNSSNTIEKSEEVCKERP
EAVEQMRIDVNNSLEDTNMNAVESEAQKNIAGLDEDLIMEDFGVEVVPFH
DPWSKLLIKHPVRNKRCGHIYDRETVLMIIKDNIGILCPVRDCPNLSDIK
LEHLVKDPDVEQELQKRKSDKIQNETSSDEDASFLDH
BO28912.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:22:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42300-PA | 181 | CG42300-PA | 1..181 | 1..181 | 938 | 100 | Plus |
| CG42299-PA | 182 | CG32584-PA | 1..182 | 1..181 | 919 | 98.4 | Plus |
| cerv-PD | 230 | CG15645-PD | 17..230 | 9..187 | 493 | 53.7 | Plus |
| cerv-PA | 230 | CG15645-PA | 17..230 | 9..187 | 493 | 53.7 | Plus |
| cerv-PC | 177 | CG15645-PC | 16..177 | 33..187 | 466 | 60.5 | Plus |
