Clone BO28913 Report

Search the DGRC for BO28913

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:289
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG41106-RA
Protein status:BO28913.pep: Imported from assembly
Sequenced Size:403

Clone Sequence Records

BO28913.complete Sequence

403 bp assembled on 2011-08-24

GenBank Submission: KX796699

> BO28913.complete
GAAGTTATCAGTCGACATGGAGGACACAGATCAGGAAGACCTGCTGGCTT
TCGAGCGTCGGCTGGCTGAGGTGGTAAACACTGAGAAACGGAGTTCACTC
CGCTGGCGCTTTGTTCTGGGCGCCATCTTCGCCTGCTCGGCGATCAGTGC
CTGTCATTGGGTTCGGGATGCCAAGGAAAGCGAGTCGGTGGTTTTCCAAA
TCCTGTCCAGTCAAAGCGCCTTTGCCTTCTCCCTGGCAACCATATGCCTG
CTAATCTTTTATGGATTCAATCACGCCACTAAGCAGGACCCCAGTATCCT
GCGTGACACCCAAGAAATGCTGTCTCCGTTCCGCCTTAACATTGATAACC
AGGGACGTCTCATCCTACTTCCACGGCAGACAGAGGCAAGCTTTCTAGAC
CAT

BO28913.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG41106-RA 372 CG41106-PA 1..369 17..385 1845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG41106-RA 957 CG41106-RA 165..533 17..385 1845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22945485..22945853 17..385 1845 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:07:42 has no hits.

BO28913.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:56 Download gff for BO28913.complete
Subject Subject Range Query Range Percent Splice Strand
CG41106-RA 165..533 17..387 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:58 Download gff for BO28913.complete
Subject Subject Range Query Range Percent Splice Strand
CG41106-RA 165..533 17..387 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:50 Download gff for BO28913.complete
Subject Subject Range Query Range Percent Splice Strand
CG41106-RA 165..533 17..387 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:50 Download gff for BO28913.complete
Subject Subject Range Query Range Percent Splice Strand
X 22945485..22945853 17..387 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:58 Download gff for BO28913.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 22347321..22347689 17..387 99   Plus

BO28913.pep Sequence

Translation from 16 to 403

> BO28913.pep
MEDTDQEDLLAFERRLAEVVNTEKRSSLRWRFVLGAIFACSAISACHWVR
DAKESESVVFQILSSQSAFAFSLATICLLIFYGFNHATKQDPSILRDTQE
MLSPFRLNIDNQGRLILLPRQTEASFLDH

BO28913.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG41106-PA 123 CG41106-PA 1..123 1..123 624 100 Plus
CG8009-PA 127 CG8009-PA 1..122 1..122 205 37.7 Plus
CG8009-PB 131 CG8009-PB 1..126 1..122 189 36.5 Plus