Clone BO28916 Report

Search the DGRC for BO28916

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:289
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG8270-RB
Protein status:BO28916.pep: Imported from assembly
Sequenced Size:1960

Clone Sequence Records

BO28916.complete Sequence

1960 bp assembled on 2011-09-20

GenBank Submission: KX794503

> BO28916.complete
GAAGTTATCAGTCGACATGGATAATTCCAATGGAATCCACTACATTGAGC
TAACCCCAAATCCCATACGATTTGATGCTGTCAGCCAACTAACCAATGTG
TTTTTCGATGACTCCAACAAGCAGATATTTGCTGTTCGGTCTGGAGGAGC
TACTGGTGTGGTGGTCAAAGGTCCTGGATCTCCCGACGATGTCGTCATCT
CCTTTTGCATGAGCGACCGTGGCGGTGCCATAAGGTCCATTAAGTTCTCG
CCGGACAACCAAATCTTGGCCGTTCAGCGAAAGGAGAATTCCGTGGAGTT
CATATGTTTTCAGGGAGATCAGCCTCTGCTGCAGGACATCATTACCCACC
AGGTGAAGACTCTGATCCATGGCTTTGTTTGGGTCCACAATCGGGAGGTG
GCCCTGATTTCGAATACCGGCGTGGAGGTCTACACCGTAGTTCCTGAGAA
GCGACAGGTGCGCTCTGTGAAATCCCTGAGCATTGGCATCAAGTGGTTCG
CCTGGTGCTGCGATGCCAATGTGGCTCTACTGTGCACCAGCGAAGGAAAC
TCCCTGATTCCGGTGCTGGTCAAGCAGAAAGTAATCACCAAGCTGCCCAA
AGTGGACTTGGGCAATCCAAGTCGCGATGTCCAGGAGAGCAAGGTCACCT
TAGGCCAAGTTTACGGCGTGCTGGCTGTGCTTATCCTCCAGTCAAATAGC
ACCACCGGACTGATGGAAGTCGAGGTGCACTTGCTCAATGGACCGGGCTT
GGCTCCACGCAAGTGCCATGTGCTCCGCTTAAGTCTGCTTGGTCGCTTCG
CCATCAACACGGTGGATAATCTGATTGTGGTGCACCATCAAGCTTCGGGC
ACTTCGCTGCTATTCGACATCTCCCTGCCCGGAGAGGTGATCAATGAAAT
AACCTATCATACACCCATAACTCCAGGGCGCTCCATCAAACCGTTTGGCC
TGAAACTGCCCTCACTTTCGCCTGATGGACAAATCTTGCAGTGCGAGTTG
TATTCCACGCACTGGGTACTGTTCCAGCCAAATATTGTAATCGATGCCAA
GTTGGGTTGCATGTGGTTTTTGAACCTCTGCATTGAACCATTGTGCCAAC
TGATTTCGGATCGCATTCGACTTACAGAATTCCTGCTGCAACGCAGCAAT
GGCAAGCAGATGCTATTAAAAGTCATTGGACAATTGGTAGATGATCAGTA
TAAGGGAACTCTATTGCCAGTCCTAGAGACCATCTTCAGTCGGATTAACA
AGATCTATGCGTCTTGGGTCCAGTTGGAGCTGCAAAATCAAACCGCTCAA
CCGTCGAACGTAAAAACTACTACCCTGAAACAGAGCACACCGCCCATTGT
GCTCATTGAGCAACTGGATATGGTGCAAATCTTTCAGCGCATAGCTCGTC
GCCCGTACACGGAATCCATATTGATGCTCTACCTGCAATCCCTGAACAAG
TTCAACATTGCCGCCCAGGAGGAGCTGAGCAAGATGATCATCAGCGAGCT
GATCTCCAATCGCAGCTTCGACACCTTGCGACGCTTGGTCAGCTATTCAA
TGCTGCTGGAATCCAAGTCGGTGGCTTGCTTTTTGTTGTCGCATTCAAAT
GTGGATACGGCGATATCCCAGGTGGCCATCGATATGCTGGGCAGGATTGA
AGCACATGAGATCATCATTGAAGTAATGCTGGGTCAAGGCAAAGTTATTG
ATGCCTTAAGGCTGGCTAAGAATTCAATGGGTCTGGAAAAAGTGCCAGCT
CGCAAGTTTCTGGAGGCGGCTCATAAGACAAAGGATGATCTAATATTCCA
CAGCGTATACCGCTTTTTCCAAATGAGAAACCTGAAACTTTATGAAACCC
TATCTTTTCCCAAGGCTGAACAATGCACGGAATTCATACAGCATTATAAT
AACACTTTTCCTGCTGATAATCCTACCAGACAGCCTGTAAGCGCAAGCTT
TCTAGACCAT

BO28916.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG8270-RB 1929 CG8270-PB 1..1926 17..1942 9615 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8270-RB 2170 CG8270-RB 81..2006 17..1942 9615 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6488928..6489413 123..608 2415 99.8 Plus
3L 28110227 3L 6490239..6490638 1261..1660 2000 100 Plus
3L 28110227 3L 6489470..6489862 609..1001 1965 100 Plus
3L 28110227 3L 6489918..6490178 1002..1262 1305 100 Plus
3L 28110227 3L 6490697..6490903 1659..1865 1035 100 Plus
3L 28110227 3L 6488761..6488872 17..128 545 99.1 Plus
3L 28110227 3L 6490969..6491046 1865..1942 390 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:27:53 has no hits.

BO28916.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:55:46 Download gff for BO28916.complete
Subject Subject Range Query Range Percent Splice Strand
CG8270-RB 86..2011 17..1944 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:53 Download gff for BO28916.complete
Subject Subject Range Query Range Percent Splice Strand
CG8270-RB 81..2006 17..1944 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:58 Download gff for BO28916.complete
Subject Subject Range Query Range Percent Splice Strand
CG8270-RB 81..2006 17..1944 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:58 Download gff for BO28916.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6488761..6488868 17..124 100 -> Plus
3L 6488930..6489413 125..608 99 -> Plus
3L 6489470..6489862 609..1001 100 -> Plus
3L 6489918..6490176 1002..1260 100 -> Plus
3L 6490239..6490638 1261..1660 100 -> Plus
3L 6490699..6490903 1661..1865 100 -> Plus
3L 6490970..6491046 1866..1944 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:53 Download gff for BO28916.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6484070..6484146 1866..1944 97   Plus
arm_3L 6481861..6481968 17..124 100 -> Plus
arm_3L 6482030..6482513 125..608 99 -> Plus
arm_3L 6482570..6482962 609..1001 100 -> Plus
arm_3L 6483018..6483276 1002..1260 100 -> Plus
arm_3L 6483339..6483738 1261..1660 100 -> Plus
arm_3L 6483799..6484003 1661..1865 100 -> Plus

BO28916.pep Sequence

Translation from 16 to 1960

> BO28916.pep
MDNSNGIHYIELTPNPIRFDAVSQLTNVFFDDSNKQIFAVRSGGATGVVV
KGPGSPDDVVISFCMSDRGGAIRSIKFSPDNQILAVQRKENSVEFICFQG
DQPLLQDIITHQVKTLIHGFVWVHNREVALISNTGVEVYTVVPEKRQVRS
VKSLSIGIKWFAWCCDANVALLCTSEGNSLIPVLVKQKVITKLPKVDLGN
PSRDVQESKVTLGQVYGVLAVLILQSNSTTGLMEVEVHLLNGPGLAPRKC
HVLRLSLLGRFAINTVDNLIVVHHQASGTSLLFDISLPGEVINEITYHTP
ITPGRSIKPFGLKLPSLSPDGQILQCELYSTHWVLFQPNIVIDAKLGCMW
FLNLCIEPLCQLISDRIRLTEFLLQRSNGKQMLLKVIGQLVDDQYKGTLL
PVLETIFSRINKIYASWVQLELQNQTAQPSNVKTTTLKQSTPPIVLIEQL
DMVQIFQRIARRPYTESILMLYLQSLNKFNIAAQEELSKMIISELISNRS
FDTLRRLVSYSMLLESKSVACFLLSHSNVDTAISQVAIDMLGRIEAHEII
IEVMLGQGKVIDALRLAKNSMGLEKVPARKFLEAAHKTKDDLIFHSVYRF
FQMRNLKLYETLSFPKAEQCTEFIQHYNNTFPADNPTRQPVSASFLDH

BO28916.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8270-PB 642 CG8270-PB 1..642 1..642 3280 100 Plus