BO28917.complete Sequence
1870 bp assembled on 2011-09-19
GenBank Submission: KX794252
> BO28917.complete
GAAGTTATCAGTCGACATGTCCAAATATCTAAGCAGTCAGAGAGATGCCC
TTTCCGCACCCGCGCTTCCAGTAAGCAGGGAAAACCGGGAGCCACCTAAA
TTCCAAGGGCAACGCGAGCCACTGGTCTTTTTCATCATGCGACTGAACCT
AAAAGCCGTGCTGCTTGTCCTCACAGTGGCTGTGGTGGTAATCACTCTGG
GCGTGTATATGCGCTGCGCCGCCTTCTCCTTTTCGCCGGACTTTGTGCGT
CCTCTGGACCGGTCCGCAAGGCAGTCCTCCAGCGGAGGAGAAGCTACAGC
GCTGCACGACATTGAGTGCTCCATTAACCAGGAGTACACCGTGCACTGCA
AGCGAGACGAGAACGCCAACGAGGTTTACGTTCCGTTTTCCTTCCTGCGT
AACTACTTCGACGTCAGTGGAGCAGTTTCCACCAACAGCAATGAGGTGGC
CAAGTTCAACTGGGTGCACAGCACAGCCAAAGTTAACCTTCCCAGGGGAA
AGTACGATGCGCGCGGCGTCTATATGTACTTTGAGAACTACAACGTGGAA
GTGCGCGACCGGGTAAAGTGCATCAGTGCCGCGGAGGGCGTTCCAGTGAG
CACGCAATGGGAGAAGCGTGGGTACTTTTACCCCACACAAATTGCCCAGT
TCGCGTTGTCGCACTACAGCAAGAACCTCACAGAGCCGGCACCCAGGGTT
CGCGTGTTGGAGGACGGCGACGGGAACCAGATGGAATGGAGTACGCCCAA
GACCAGCAACATGACCCGCATCTGGCACCACAAGTTTAACACCAGTGTTG
TCCAGTTCGAGACGGCACCTGGTTACGAAGGCGTCATCAGCATTGCTCTA
AACCAGACATTGGATCTTCTGCTCAGCGTTGATCTGCTCCTGGTAACCAA
TAGCAGTAGTCTCATGATTACCGTTCAGAATCGGGACACCCGTCACAACT
ACAGCCTGCACTACATACCCGCAGATCTGCTGCTGAGCGTGCAGGATACA
AACATCTACTACGGTCTGGGAGGCTCGGCACTGAACAAGTGGCGCCACAT
CACTCGAGACCTGCACATTGACCTTCAAAAGGGCATCATGGGTGACAAAC
GCTCGCCGCTAAAGATACGGCGCTCCGATCTGGAGGTAATATCTATTGGC
TTTCTGGGCCTTGGCTTCTTCGACAATATCACCTTGTCCACCAGTGACCA
TCTGGCTCACTTCTACGACGCGGCTGAGTGGTTCGTCCACAACCAGGACC
CCAAGACGGGTGGCTGGACCAATCCTGTGCGTCGCAGCCTCAACGGCTTT
GCCGAATTGCGTCCGGGGTGGATATCAGCCATGGGCCAGGGACACGCTAT
TTCAGTGCTGGCACGAGCCTACTGGCACTCCGGCGGGGATGAACGCTACC
TTCGAGCGGCCGCAGCCGGACTGCAGCCTTATAGGGTATACTCGCGCGAT
GGCGGCGTTCTGGCGCAGTTCATGGACAAGTTCTACTGGTACGAGGAGTA
CCCCACCACGCCACCCTCTTATGTGCTAAACGGCTTTATCTATTCACTGC
TGGGTCTCTACGATCTCAACAGCACTGCCCCGGGAAAAATCGCCCGCGAG
GCTGGAAAGCTTTTCGCGCAGGGCATGCACTCCCTTAAAAAGATGCTGTT
GCTATTTGACACTGGCTCCGGCACCAGCTACGACCTGCGCCATCTGAGCC
TGGGCGTAGCTCCTAATCTGGCGCGCTGGGACTACCATGCAACGCACGTG
AACCAGTTACTTCTGTTAGCCACCATCGACAGCGATCCATTAATTGCACA
AACTGCGGAGCGCTGGAAGGGCTATATGTTTGGTCGTCGGGCCAAGCACA
ACGCAAGCTTTCTAGACCAT
BO28917.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:07:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsepi-RB | 1839 | CG3194-PB | 1..1836 | 17..1852 | 9180 | 100 | Plus |
| Hsepi-RA | 1845 | CG3194-PA | 1..1842 | 17..1852 | 9085 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:07:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsepi-RB | 3048 | CG3194-RB | 332..2167 | 17..1852 | 9180 | 100 | Plus |
| Hsepi-RA | 3054 | CG3194-RA | 332..2173 | 17..1852 | 9085 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:07:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6671506..6672887 | 1490..109 | 6910 | 100 | Minus |
| 2R | 25286936 | 2R | 6671035..6671403 | 1852..1484 | 1830 | 99.7 | Minus |
| 2R | 25286936 | 2R | 6672949..6673041 | 109..17 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:07:25 has no hits.
BO28917.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:20 Download gff for
BO28917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3194-RB | 305..2140 | 17..1854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:58 Download gff for
BO28917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsepi-RB | 332..2167 | 17..1854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:16 Download gff for
BO28917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsepi-RB | 332..2167 | 17..1854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:16 Download gff for
BO28917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6671508..6672886 | 110..1488 | 100 | <- | Minus |
| 2R | 6672949..6673041 | 17..109 | 100 | | Minus |
| 2R | 6671032..6671398 | 1489..1854 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:58 Download gff for
BO28917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2558537..2558903 | 1489..1854 | 99 | <- | Minus |
| arm_2R | 2559013..2560391 | 110..1488 | 100 | <- | Minus |
| arm_2R | 2560454..2560546 | 17..109 | 100 | | Minus |
BO28917.pep Sequence
Translation from 16 to 1870
> BO28917.pep
MSKYLSSQRDALSAPALPVSRENREPPKFQGQREPLVFFIMRLNLKAVLL
VLTVAVVVITLGVYMRCAAFSFSPDFVRPLDRSARQSSSGGEATALHDIE
CSINQEYTVHCKRDENANEVYVPFSFLRNYFDVSGAVSTNSNEVAKFNWV
HSTAKVNLPRGKYDARGVYMYFENYNVEVRDRVKCISAAEGVPVSTQWEK
RGYFYPTQIAQFALSHYSKNLTEPAPRVRVLEDGDGNQMEWSTPKTSNMT
RIWHHKFNTSVVQFETAPGYEGVISIALNQTLDLLLSVDLLLVTNSSSLM
ITVQNRDTRHNYSLHYIPADLLLSVQDTNIYYGLGGSALNKWRHITRDLH
IDLQKGIMGDKRSPLKIRRSDLEVISIGFLGLGFFDNITLSTSDHLAHFY
DAAEWFVHNQDPKTGGWTNPVRRSLNGFAELRPGWISAMGQGHAISVLAR
AYWHSGGDERYLRAAAAGLQPYRVYSRDGGVLAQFMDKFYWYEEYPTTPP
SYVLNGFIYSLLGLYDLNSTAPGKIAREAGKLFAQGMHSLKKMLLLFDTG
SGTSYDLRHLSLGVAPNLARWDYHATHVNQLLLLATIDSDPLIAQTAERW
KGYMFGRRAKHNASFLDH
BO28917.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsepi-PB | 612 | CG3194-PB | 1..612 | 1..612 | 3226 | 100 | Plus |
| Hsepi-PA | 614 | CG3194-PA | 1..614 | 1..612 | 3213 | 99.7 | Plus |
