BO28918.complete Sequence
886 bp assembled on 2011-08-24
GenBank Submission: KX793747
> BO28918.complete
GAAGTTATCAGTCGACATGGCCACAAGCGCGAACTCTGTTCAAGTTTCTG
GAGCCGGTGCGGAGGTAAACGAAGCTAAACTCATCTGCATCTGGGAGGGA
ATAACTGAGCTGATCCTGTGGCGCAACTGGATAAAGTCGATGCTTGTATT
CGTAATGCTACAGACCATAATTTATGATCTGCTTTCTGAACCGCTTGTGT
TCGTGGTGAGCGTATGGGCTTTGATTATCATGGTCATATCAATGGGGTAC
CGTTTTTTGGTACAGTACACTAATACCCATATCCAGAACAACAGCTATCC
GAAATATCTTGACATAGACCTAAGAATCTCCCAGGAGTTATCTAAGCAAC
TGGGTGTTCTAGTTTCAACCAAAGTTGTTGCGTTTCTAAATAATCTACGA
GAGATATTACTAGTAAAGAGCTTTTCGAAATCATTCAAGTGGTTTGGCCT
TCTCCTAATAATTAGCAAACTTGGAAAGCAGATTAACTTTCTAATTGTTG
GCCAATTAGGGCTGTTTCTACTCTTCACAATTCCCAAAATGTGTGAGATG
AATAGACGTTCATCAAATATTGTACAACTTCCTAAATTTAATAAACAATA
TCAAATTACCAAAGTAAACGCTTCGACCGAAACCCAGAATGCATTGGACA
TGGAATCCTTAAAAGAGTGCAACGAGGACACCATAAAGCTAATTGAAAAG
CAACCAGAAGGGATGGATCTCTCACTCGGCTGTGATATTACCAAGGAATC
CCAGAATGCGGCTGATGATCTTAAAGCCTTTAAAGTAAAGGAGGAAATAG
ACATTGATGCTTTTGAGCGACTTGCCGATTCCTGGTCCGACGAAGATACA
CTTACTGATCAAAAAAATGCAAGCTTTCTAGACCAT
BO28918.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:08:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42853-RA | 855 | CG42853-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42853-RA | 1001 | CG42853-RA | 63..914 | 17..868 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18121434..18121927 | 510..17 | 2470 | 100 | Minus |
| 3L | 28110227 | 3L | 18121019..18121379 | 868..508 | 1805 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:08:39 has no hits.
BO28918.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:58 Download gff for
BO28918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42853-RA | 63..906 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:20 Download gff for
BO28918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42853-RA | 63..906 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:12 Download gff for
BO28918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42853-RA | 63..906 | 17..860 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:12 Download gff for
BO28918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18121027..18121377 | 510..860 | 100 | <- | Minus |
| 3L | 18121435..18121927 | 17..509 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:20 Download gff for
BO28918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18114127..18114477 | 510..860 | 100 | <- | Minus |
| arm_3L | 18114535..18115027 | 17..509 | 100 | | Minus |
BO28918.pep Sequence
Translation from 16 to 886
> BO28918.pep
MATSANSVQVSGAGAEVNEAKLICIWEGITELILWRNWIKSMLVFVMLQT
IIYDLLSEPLVFVVSVWALIIMVISMGYRFLVQYTNTHIQNNSYPKYLDI
DLRISQELSKQLGVLVSTKVVAFLNNLREILLVKSFSKSFKWFGLLLIIS
KLGKQINFLIVGQLGLFLLFTIPKMCEMNRRSSNIVQLPKFNKQYQITKV
NASTETQNALDMESLKECNEDTIKLIEKQPEGMDLSLGCDITKESQNAAD
DLKAFKVKEEIDIDAFERLADSWSDEDTLTDQKNASFLDH
BO28918.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:22:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42853-PA | 284 | CG42853-PA | 1..284 | 1..284 | 1433 | 100 | Plus |
| Rtnl2-PC | 255 | CG1279-PC | 15..226 | 25..240 | 182 | 25.9 | Plus |
| Rtnl2-PB | 255 | CG1279-PB | 15..226 | 25..240 | 182 | 25.9 | Plus |
| Rtnl1-PL | 222 | CG33113-PL | 7..182 | 11..182 | 150 | 25 | Plus |
