BO28925.complete Sequence
1987 bp assembled on 2011-09-19
GenBank Submission: KX799661
> BO28925.complete
GAAGTTATCAGTCGACATGAAAAACCCAAATATCATGGAATGCGGCAATT
CCTTAAACAACAACAACATTGGCGGCAATATCAACGGAAACGGAAATGGA
AATGGCGGAGTCAGCGAACAACGCCCCCTATCGGGCAAAGTCCATGCTGC
ATCTCCTCCGCCCGTCGTCGGCAACAACAACAACAACAATAGTAATCTAA
TAGTCCGTTACAACAAACTAAGCTCGGGCAGCTCCTCCGCGAGCTCATCG
CCGCCACATCATCAGCAGCACTCGCCACCACCGTCGATGCACCACCAAAG
CCATCCCAACCACCCACTCCAGCCGTCCTCCATGTCCACAAACATGGCCA
CAAATGGCCATCAGTTGTATCCGGCGATAACGGCAACGTATTGGCTCCCG
CCGCCGAATCCGGCGCCATATTTAGTTCCAGAACGTAAACTTTTCGTTGG
CATGCTGAACAAAAAGTACACCGAGGCCGATGTGAGGCAGCTCTTCACGG
GCCACGGAACCATCGAGGAGTGCACAGTGCTCCGGGATCAGGCTGGTCAG
AGCAAGGGCTGCGCCTTCGTCACATTCGCCACTAAGCAGAACGCCATTGG
AGCTATAAAGGCCCTCCATCAAAGTCAGACCATGGAAGGCTGTTCAGCTC
CGCTGGTTGTGAAATTCGCCGACACGCAAAAGGAAAAAGACCAAAAGAAG
ATGCAGCAGATTCACGCATTCTGTGGCATCAATACGCCGAGCGGTGCGAC
AGCAGGTGCGGCCACGCCCACCATTAATGCCGCAACGGCTCTAATAGCTG
CTCCGCCCTCGGCGGGACGTACCAATCCGTCGATGGCGGCCGCACTGGCG
GCAGTGCCTCAGGTTCAGCAGGCTGGTTCTGCAGCAACGGCACCAACCAC
CCTCGTTCCCCTGAATTCCACCACCGCCCTCAGTGCGTCCTTGACGCCCA
ATCTCCTAGCCACCAATGCCGCCCACCAGGGGGCGGCAGCTGCGGCCGCC
TATTTGGGGGCAGATCCCGCTGCGGCGGCCCACCTTCAGCTGTACCAACA
ACTACACGGATACGGACTGAGTCCGGCACACTATCTGCCAGGACTAAATT
TCCACCACCCACCGGAAAACAGTGCCCACCACAGCCAGCACAGTCCCGGC
ATCGGCGGCGCATCAGCAGCATCTCTATCGGCTGCAGCAGCCACAGCAGC
ATCTAACCCACTTGGCGGCGCACCACCACCCACACCCACACCCACAAGTT
CCGCCGGGCATGCTGCTGGCGCTGGACTGCTCGCCGCTCCATCCATGTCT
ATGCAGAATCTGGTAGCCCTACTAGCCACGCCCACCGCCCACCACCAGCT
GTCCCTCCATCACAGCAGCAGCAGCAGCGGCCACAACAACGGCAACAGCA
GCGCCACCAGCGGCCTCCACAACCAGCGGCTGACCTACGCGGCCGCACCA
CCACCACCACCCATCTCGACCACCTACAACATGCCGCAGCTAATCGGTCA
CACGGCCACGCCCACCCAGCCAGGGGGCAGCAGCCAATCGCTGACCTTCA
ATGCGCTGTGGCCTCCAAATGCCGCCGACCCCTATTCATCCTCGCTGAGC
GGACTGACAAATGGAGCCGCCTACGGAGCCGCATCTCAACCTGTGACCAC
CAGCGCCCTTCAAGCGGCAGCTGCCGGCGTGACTGGCAAGCAGATCGAGG
GTCCCGATGGCAGCAATCTTTTCATTTATCACCTACCTCAGGAGTTCATT
GACACAGATCTCGCGTCGACGTTTCTTCCCTTCGGCAATGTCCTTTCGGC
CAAGGTGTTCATCGATAAGCAGACCAACCTGTCGAAGTGTTTCGGCTTTG
TGTCCTACGATAATCCCCACTCGGCCAACGCCGCTATCCAGGCGATGCAT
GGCTTTCAAATCGGCAGCAAGCGGCTGAAGGTCCAACTTAAACGTTCCAA
GGATGCGGCTAAGCCGTACGCAAGCTTTCTAGACCAT
BO28925.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:45:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bru-2-RJ | 1956 | CG43065-PJ | 1..1953 | 17..1969 | 9765 | 100 | Plus |
| bru-2-RH | 1956 | CG43065-PH | 1..1953 | 17..1969 | 9765 | 100 | Plus |
| bru-2-RL | 2682 | CG43065-PL | 1141..2679 | 431..1969 | 7695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:45:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bru-2-RJ | 3281 | CG43065-RJ | 360..2314 | 15..1969 | 9775 | 100 | Plus |
| bru-2-RH | 3190 | CG43065-RH | 269..2223 | 15..1969 | 9775 | 100 | Plus |
| bru-2-RL | 4177 | CG43065-RL | 1672..3210 | 431..1969 | 7695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:45:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12389188..12389671 | 609..1092 | 2420 | 100 | Plus |
| 2L | 23513712 | 2L | 12393388..12393859 | 1089..1560 | 2360 | 100 | Plus |
| 2L | 23513712 | 2L | 12373695..12374111 | 15..431 | 2085 | 100 | Plus |
| 2L | 23513712 | 2L | 12396292..12396561 | 1700..1969 | 1350 | 100 | Plus |
| 2L | 23513712 | 2L | 12385556..12385741 | 426..611 | 930 | 100 | Plus |
| 2L | 23513712 | 2L | 12395900..12396042 | 1560..1702 | 715 | 100 | Plus |
| 2L | 23513712 | 2L | 12310684..12310913 | 1703..1932 | 445 | 79.6 | Plus |
| 2L | 23513712 | 2L | 12298556..12298724 | 420..588 | 260 | 76.9 | Plus |
Blast to na_te.dros performed 2014-11-27 12:45:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2420 | 1131..1247 | 139 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5596..5686 | 6..92 | 121 | 62.6 | Plus |
BO28925.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:22 Download gff for
BO28925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bru-2-RJ | 362..2314 | 17..1971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:41 Download gff for
BO28925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bru-2-RH | 271..2223 | 17..1971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:53 Download gff for
BO28925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bru-2-RH | 271..2223 | 17..1971 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:53 Download gff for
BO28925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12395900..12396040 | 1560..1700 | 100 | -> | Plus |
| 2L | 12396293..12396561 | 1701..1971 | 99 | | Plus |
| 2L | 12373697..12374111 | 17..431 | 100 | -> | Plus |
| 2L | 12385562..12385740 | 432..610 | 100 | -> | Plus |
| 2L | 12389190..12389670 | 611..1091 | 100 | -> | Plus |
| 2L | 12393391..12393858 | 1092..1559 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:41 Download gff for
BO28925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12373697..12374111 | 17..431 | 100 | -> | Plus |
| arm_2L | 12385562..12385740 | 432..610 | 100 | -> | Plus |
| arm_2L | 12389190..12389670 | 611..1091 | 100 | -> | Plus |
| arm_2L | 12393391..12393858 | 1092..1559 | 100 | -> | Plus |
| arm_2L | 12395900..12396040 | 1560..1700 | 100 | -> | Plus |
| arm_2L | 12396293..12396561 | 1701..1971 | 99 | | Plus |
BO28925.pep Sequence
Translation from 16 to 1987
> BO28925.pep
MKNPNIMECGNSLNNNNIGGNINGNGNGNGGVSEQRPLSGKVHAASPPPV
VGNNNNNNSNLIVRYNKLSSGSSSASSSPPHHQQHSPPPSMHHQSHPNHP
LQPSSMSTNMATNGHQLYPAITATYWLPPPNPAPYLVPERKLFVGMLNKK
YTEADVRQLFTGHGTIEECTVLRDQAGQSKGCAFVTFATKQNAIGAIKAL
HQSQTMEGCSAPLVVKFADTQKEKDQKKMQQIHAFCGINTPSGATAGAAT
PTINAATALIAAPPSAGRTNPSMAAALAAVPQVQQAGSAATAPTTLVPLN
STTALSASLTPNLLATNAAHQGAAAAAAYLGADPAAAAHLQLYQQLHGYG
LSPAHYLPGLNFHHPPENSAHHSQHSPGIGGASAASLSAAAATAASNPLG
GAPPPTPTPTSSAGHAAGAGLLAAPSMSMQNLVALLATPTAHHQLSLHHS
SSSSGHNNGNSSATSGLHNQRLTYAAAPPPPPISTTYNMPQLIGHTATPT
QPGGSSQSLTFNALWPPNAADPYSSSLSGLTNGAAYGAASQPVTTSALQA
AAAGVTGKQIEGPDGSNLFIYHLPQEFIDTDLASTFLPFGNVLSAKVFID
KQTNLSKCFGFVSYDNPHSANAAIQAMHGFQIGSKRLKVQLKRSKDAAKP
YASFLDH
BO28925.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bru-2-PJ | 651 | CG43065-PJ | 1..651 | 1..651 | 3409 | 100 | Plus |
| bru-2-PH | 651 | CG43065-PH | 1..651 | 1..651 | 3409 | 100 | Plus |
| bru-2-PL | 893 | CG43065-PL | 381..893 | 139..651 | 2643 | 100 | Plus |
| bru-2-PE | 893 | CG31761-PE | 381..893 | 139..651 | 2643 | 100 | Plus |
| bru-2-PI | 350 | CG43065-PI | 1..254 | 146..421 | 1103 | 83.7 | Plus |
