BO28926.complete Sequence
592 bp assembled on 2011-08-24
GenBank Submission: KX798766
> BO28926.complete
GAAGTTATCAGTCGACATGAGCATGGAGAAAGTAGCCAACAAGCAGTACG
AGACGAAAAACTGGCCAGATATTGTCGACAGCGACGACAGCGATGTGGAT
AATCAGATAGATGTGGACAACCTGCCACCACTGGAGGTGGGTCCCGGCGA
GAACCGGCTGCAGCACACATACTGCCTCTGGTTCTCTCGCAAGGAGACGC
AGCGCGCGGCCGCCGACTACAGCAAGTCGCTGCACATGGTCGGCCGGTGC
GCCAGCGTGCAGCAGTGGTGGTCGCTCTACTCGCACCTCATCCGGCCCAC
CGCCCTGAAGCCCTACCGGGAGCTCCTCCTCTTCAAGCAGGGCATCATAC
CGATGTGGGAGGACCCGGCGAACAGCAAGGGCGGCCAGTGGTTGATACGA
CTACGCAAGAACAAGGTCGACCGGGCCTGGGAGAACGTTTGTATGGCGAT
GCTCGGGGAGCAGTTCCTCGTCGGCGACGAGATATGCGGAGTCGTGCTAC
AGACGAAATATCCGATAAAAACCGAACACAGCCGGCCAATGCATACAAAT
GAGCGAAGGAGCGATGGAGTCACGGCAAGCTTTCTAGACCAT
BO28926.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:12:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4EHP-RC | 561 | CG33100-PC | 1..558 | 17..574 | 2790 | 100 | Plus |
4EHP-RB | 747 | CG33100-PB | 1..499 | 17..515 | 2495 | 100 | Plus |
4EHP-RD | 729 | CG33100-PD | 1..498 | 17..514 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4EHP-RC | 4539 | CG33100-RC | 454..1011 | 17..574 | 2790 | 100 | Plus |
4EHP-RB | 2401 | CG33100-RB | 454..952 | 17..515 | 2495 | 100 | Plus |
4EHP-RD | 1324 | CG33100-RD | 454..951 | 17..514 | 2490 | 100 | Plus |
4EHP-RB | 2401 | CG33100-RB | 1702..1762 | 514..574 | 305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24106825..24107284 | 514..55 | 2300 | 100 | Minus |
3R | 32079331 | 3R | 24068005..24068065 | 574..514 | 305 | 100 | Minus |
3R | 32079331 | 3R | 24108469..24108507 | 55..17 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:12:15 has no hits.
BO28926.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:35:01 Download gff for
BO28926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4EHP-RC | 414..971 | 17..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:51 Download gff for
BO28926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4EHP-RC | 454..1011 | 17..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:31 Download gff for
BO28926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4EHP-RC | 454..1011 | 17..576 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:31 Download gff for
BO28926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24068001..24068064 | 515..576 | 96 | <- | Minus |
3R | 24106825..24107284 | 55..514 | 100 | <- | Minus |
3R | 24108470..24108507 | 17..54 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:51 Download gff for
BO28926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19893723..19893786 | 515..576 | 96 | <- | Minus |
arm_3R | 19932547..19933006 | 55..514 | 100 | <- | Minus |
arm_3R | 19934192..19934229 | 17..54 | 100 | | Minus |
BO28926.pep Sequence
Translation from 16 to 592
> BO28926.pep
MSMEKVANKQYETKNWPDIVDSDDSDVDNQIDVDNLPPLEVGPGENRLQH
TYCLWFSRKETQRAAADYSKSLHMVGRCASVQQWWSLYSHLIRPTALKPY
RELLLFKQGIIPMWEDPANSKGGQWLIRLRKNKVDRAWENVCMAMLGEQF
LVGDEICGVVLQTKYPIKTEHSRPMHTNERRSDGVTASFLDH
BO28926.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:22:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4EHP-PC | 186 | CG33100-PC | 1..186 | 1..186 | 1012 | 100 | Plus |
4EHP-PA | 223 | CG33100-PA | 1..166 | 1..166 | 905 | 100 | Plus |
4EHP-PD | 242 | CG33100-PD | 1..166 | 1..166 | 905 | 100 | Plus |
4EHP-PB | 248 | CG33100-PB | 1..166 | 1..166 | 905 | 100 | Plus |
eIF4E-5-PA | 232 | CG8277-PA | 57..173 | 48..164 | 216 | 35.8 | Plus |