Clone BO28929 Report

Search the DGRC for BO28929

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:289
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG43093-RA
Protein status:BO28929.pep: Imported from assembly
Sequenced Size:397

Clone Sequence Records

BO28929.complete Sequence

397 bp assembled on 2011-08-24

GenBank Submission: KX799779

> BO28929.complete
GAAGTTATCAGTCGACATGCAGCTGAGTATTATAGTATTGCTCTTGTGCT
CGGTGGTTGTTGCAAATTCACTTGCCCCAAGTCAACTGGCATCGAAAACC
CCATCACCCAATGTAAGCAAGGATCAGCCGTCATCCAGGGAGGAGAAACC
CAGTTTGAAACCGTGCAAACCCATCGAGACTGTGAGTTCAGAGCCAAAAG
GACTAGGCAATACTCCTAAAGTCGGTTCAATTACTCCGGAATCAGCTAAA
ACGTCTGGCACAACCGTGGATAAAAGTCTGGATGATTGCGAACCCATTCC
CGAGGGTATTGGATCTCGATTGAATGCGAGAACTCTTCAAACACTGGTTA
TAAAAAATAATAATAACCCTCTTTTTAATGCAAGCTTTCTAGACCAT

BO28929.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG43093-RA 366 CG43093-PA 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG43093-RA 476 CG43093-RA 4..366 17..379 1815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22769885..22770235 379..29 1755 100 Minus
Blast to na_te.dros performed 2014-11-26 16:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 5929..5965 329..365 113 78.4 Plus

BO28929.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:35:04 Download gff for BO28929.complete
Subject Subject Range Query Range Percent Splice Strand
CG43093-RA 4..366 17..381 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:21 Download gff for BO28929.complete
Subject Subject Range Query Range Percent Splice Strand
CG43093-RA 4..366 17..381 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:59 Download gff for BO28929.complete
Subject Subject Range Query Range Percent Splice Strand
CG43093-RA 4..366 17..381 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:59 Download gff for BO28929.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22769882..22770235 29..381 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:21 Download gff for BO28929.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18595604..18595957 29..381 99 <- Minus

BO28929.pep Sequence

Translation from 16 to 397

> BO28929.pep
MQLSIIVLLLCSVVVANSLAPSQLASKTPSPNVSKDQPSSREEKPSLKPC
KPIETVSSEPKGLGNTPKVGSITPESAKTSGTTVDKSLDDCEPIPEGIGS
RLNARTLQTLVIKNNNNPLFNASFLDH

BO28929.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG43093-PA 121 CG43093-PA 1..121 1..121 612 100 Plus