BO28934.complete Sequence
1483 bp assembled on 2011-08-24
GenBank Submission: KX799702
> BO28934.complete
GAAGTTATCAGTCGACATGACGTATCTTTTTGTGTGGATTTTTTTGTGCT
CATTGGGATCTTGCCAGTTGGCGTATTCCATGTTTTTGAAGCAGCCCTGT
GGAAAAACACCAGTCCCGAAAATTATTTCAGGCTCAAACGCAAGTCAACA
AAGTGCTCAGTATATGGCAGGCATTTTTAATACAACACATTTGTTGTGCG
GCGGCACGATTATTCACGAAGATTTTGTTTTAACGGTTGCTCATTGCAAA
AGTACACAAACGCTATTCGTGAGACTTGGAGCGTACAACATTAATCACCC
GACCGATCAGATTCGCGTAATCGAAACTATAGCCCATCCACAATACAGCA
ATTCCACTTATGCCAACGATATAGCCCTGGTGAAGTTGGAGAGGAGTGTG
ATATTTAACCTTAATATTCAACCAATATGCATTCACTTGGACGCAACATT
GGGCAAACAAATACGCTATTATAATGCCTTTGGATGGGGAAGAACAAGAA
ATGCCGAGCAAAGCGATATACTTCAAAGAATTTTTGTTAATCGAACCAAC
CCAATGATATGCCATCTCTATTTGGGAATGAGTCCCGATCCGAAACAGAT
ATGTGCGACTACCGACCAAGGAGATACATGTGCCGGCGATTCTGGCGGTC
CGTTGATCAGCAAAATTACTTACCAGGGGAAGAATTTCGATACACAGTTC
GGGATTACCAGTTATGGCACCAGGGAATGCAATGGAGTTGGTCTCTATAC
CGATGTCTCACAGTATAGTGGCTGGATTGCAAATATAGTTAGGAGCAAAC
AGGATCGTAGTGTGGTCAGTAGGAGGAGCAACGGTATGTTTCTGTATTCT
GACTGCACTGGCGATTCCATCGGATCCATTCTAATGGCAACCATCGTTGG
ACTTCAATACTCCGCGAAGGGTGTACTGATCACCGACCGCCATGTCCTAA
CCACTGCGGACTTTTCCCAAGACAACCCCTTCTCCTTAGCCATTGTTGTG
ATGGGTATGGAATTCCAAGCTAGCGCGATTTTTAAGCCGTTTGCGGACAT
TAACATATCACTGATTAGCCTGACGCGTCGGTTGGAAAACAGAGGTGCAT
TGAGACCGATCTGCATTCTGGAAACTGCAAACATCGCTGGTTCTTTAAGA
ATCACTGGCACAGGTCAATATGGCTTAAGCAATTACGTTATAAATGTGCA
AAGCCTTAATTGGCAGTTGTGTGAACTTGAGTTGAGGAGAAATATCGAAC
AGAATCAGTTTTGTGTGAAAAACACTTTCCAACCAAATGCGCTTAAGCAA
TTTGGTACAGCTGGCGATATATTGGTTAAAAAAATATTGAATGTTTCGGG
CATGGTCCATTTCGTTCTATTGGGCTTGGTAGACGTTTCGCACAATGACG
TATACGTAATAACCAGTGCTATGGCAAATGCAGAATGGATCTCGAAAATA
GTAAATCAGAATGAAGCAAGCTTTCTAGACCAT
BO28934.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:10:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43110-RA | 1452 | CG43110-PA | 1..1449 | 17..1465 | 7245 | 100 | Plus |
| CG43110-RB | 1452 | CG43110-PB | 1..1449 | 17..1465 | 7245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43110-RA | 1671 | CG43110-RA | 24..1475 | 14..1465 | 7260 | 100 | Plus |
| CG43110-RB | 8272 | CG43110-RB | 2192..3643 | 14..1465 | 7260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17482905..17483433 | 939..411 | 2645 | 100 | Minus |
| 2R | 25286936 | 2R | 17482194..17482566 | 1465..1093 | 1865 | 100 | Minus |
| 2R | 25286936 | 2R | 17483822..17484029 | 221..14 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 17483492..17483637 | 410..265 | 730 | 100 | Minus |
| 2R | 25286936 | 2R | 17482617..17482725 | 1096..988 | 545 | 100 | Minus |
| 2R | 25286936 | 2R | 17482791..17482839 | 987..939 | 245 | 100 | Minus |
| 2R | 25286936 | 2R | 17483698..17483742 | 264..220 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:10:28 has no hits.
BO28934.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:35:00 Download gff for
BO28934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43110-RA | 1..1449 | 17..1467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:00 Download gff for
BO28934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43110-RA | 27..1475 | 17..1467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:49 Download gff for
BO28934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43110-RB | 2195..3643 | 17..1467 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:49 Download gff for
BO28934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17482192..17482564 | 1095..1467 | 99 | <- | Minus |
| 2R | 17482619..17482725 | 988..1094 | 100 | <- | Minus |
| 2R | 17482791..17482839 | 939..987 | 100 | <- | Minus |
| 2R | 17482906..17483433 | 411..938 | 100 | <- | Minus |
| 2R | 17483492..17483637 | 265..410 | 100 | <- | Minus |
| 2R | 17483698..17483740 | 222..264 | 100 | <- | Minus |
| 2R | 17483822..17484026 | 17..221 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:00 Download gff for
BO28934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13369697..13370069 | 1095..1467 | 99 | <- | Minus |
| arm_2R | 13370124..13370230 | 988..1094 | 100 | <- | Minus |
| arm_2R | 13370296..13370344 | 939..987 | 100 | <- | Minus |
| arm_2R | 13370411..13370938 | 411..938 | 100 | <- | Minus |
| arm_2R | 13370997..13371142 | 265..410 | 100 | <- | Minus |
| arm_2R | 13371203..13371245 | 222..264 | 100 | <- | Minus |
| arm_2R | 13371327..13371531 | 17..221 | 100 | | Minus |
BO28934.pep Sequence
Translation from 16 to 1483
> BO28934.pep
MTYLFVWIFLCSLGSCQLAYSMFLKQPCGKTPVPKIISGSNASQQSAQYM
AGIFNTTHLLCGGTIIHEDFVLTVAHCKSTQTLFVRLGAYNINHPTDQIR
VIETIAHPQYSNSTYANDIALVKLERSVIFNLNIQPICIHLDATLGKQIR
YYNAFGWGRTRNAEQSDILQRIFVNRTNPMICHLYLGMSPDPKQICATTD
QGDTCAGDSGGPLISKITYQGKNFDTQFGITSYGTRECNGVGLYTDVSQY
SGWIANIVRSKQDRSVVSRRSNGMFLYSDCTGDSIGSILMATIVGLQYSA
KGVLITDRHVLTTADFSQDNPFSLAIVVMGMEFQASAIFKPFADINISLI
SLTRRLENRGALRPICILETANIAGSLRITGTGQYGLSNYVINVQSLNWQ
LCELELRRNIEQNQFCVKNTFQPNALKQFGTAGDILVKKILNVSGMVHFV
LLGLVDVSHNDVYVITSAMANAEWISKIVNQNEASFLDH
BO28934.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:22:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43110-PA | 483 | CG43110-PA | 1..483 | 1..483 | 2518 | 100 | Plus |
| CG43110-PB | 483 | CG43110-PB | 1..483 | 1..483 | 2518 | 100 | Plus |
| CG30187-PD | 451 | CG30187-PD | 1..451 | 50..482 | 659 | 35.4 | Plus |
| CG30187-PC | 440 | CG30187-PC | 1..440 | 50..482 | 626 | 34.6 | Plus |
| CG10764-PA | 523 | CG10764-PA | 25..516 | 23..479 | 596 | 32 | Plus |
