BO28935.complete Sequence
1702 bp assembled on 2011-09-19
GenBank Submission: KX795673
> BO28935.complete
GAAGTTATCAGTCGACATGATTTGGAGTGTGTTCTTATTTCTGTTGGCTG
CTCTTTTACGGCCGGTTCGTGGTGATCTGGATGCCCAAAGCCGCATCATT
GGAGGTTATGATGTGGATATTGAAGATGCCCCGTACCAGGCGGAAGTAAT
AATAGATGGCACAGCAATATGCAGTGGGGCGATCATCACATCAGACACCA
TCATCACAGCAGCTTCGTGTGTCCAGTCCTACGGTTCAATTGAAGTACGC
GTGGGCACCAGTTCCCGCGATTATGATGGAACTGGATTCCTGCTCGAAGT
CTGTGAAATAATTAATCACCCGCAGTACAATTGCTGGCGTTTCGATAACA
ATCTGGCACTGTTGAAGTTGTGCGATCCGCTCAAGACCTCCGAAGCTATT
CAGCCCATCAGCATAGCAGAGGATGAACCGGACGATGGTTCGTGGTGCAC
TGTCTCCGGCTGGGGATCCACCAGTTGGTGGGGCAGCTGGTGGGACAGGT
GCTTCGGCAGTCTGCCGGACTATCTGCAGATGGCATGGGTCAGCGTCTAC
AATCGGGAGCAGTGCGCCGCGGATCGCGGTGTTTGGTTCGGACTCTGGGA
CAATGGCATCTCGTACCTTACCCTCTGCACTCATAATGGCGCCGGAGGAT
GCTCCTACGATACGGGAGCTCCCTTGGTGATAGATGGACAACTCGTGGGC
ATTCTATCCGAAGGCGGCTGCACCACCAAACCAGATGTCTACGCCAATGT
ACCTTGGTTCACAGGTTGGATTGCCGAGAACACCGAAGATGAGGATACAA
CCGCTTCGACAAGTACTTCTAGTGATAGTAGTACCACTGTGGCTAGCACT
ACAACTGCTACTGTACCGAGCACTGTACCTAGTTCTGAACCTAGCACAGA
ACCTGTTGCAGTACCTAGTACTGAACCTTCCACCAGTACCGTACCCAGTA
CCATATCTAGTACCTTACCTAGTACAGTCTCTAGTACCTTACCTAGTGCA
GTCTCTAGTACCTTACCTAGTACAGTCTCTAGTACCTTACCTAGTGCAGT
CTCTAGTACCTTACCTAGTACCTTATCTAGTACTACATCTAGTACTTTAC
CTAGTACAGTATCTAGTACCTTACCTAGTACCTTAGCCAGTACTGTATCT
ACTACCTTATCTAGTACTGTATCTAGTACCTTACCTAGGATTGAAGAAAT
TACTGTACCAAGTACTGTAGCCAGTACGGTGCCTAGTACTGTGCAAAGTG
CTGAGCCGAGTTCTTTACCTAGTACTGAACAGGTTACCATACCAAGTACT
GTACCTAGTACTGTGACGAGCACTATAAAGAGTACTGAACCGAGTACTGA
AGCCAGTACTGTACCTACTACTGTACCCAGTACTGTGACGAGTACTATAG
CGAGTACTGAACCCAGCACTGTACCCAATACTGTGACGAGTACTATAGCG
AGTACTGAAGCCAGTACTGTACCTACTACTGAACCCAGTACTGTGACGAG
TACTATAGCGAGTACTGAACCCAGTAGTGCGGCATCTAGTACAGTACCTG
GTAATGCCCCAAGTACTTTAGCCAGTGCAATACCTAGTACTCCCTTTACT
ACGTTGAGTCCTTCGCCTAGCATAATAACTACGATCATGACGGCAACTGA
ACCAATATCTACTGAAAGTCCTGATACCGAGGGAGCAAGCTTTCTAGACC
AT
BO28935.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:07:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32834-RB | 1671 | CG32834-PB | 1..1668 | 17..1684 | 8340 | 100 | Plus |
| CG32834-RB | 1671 | CG32834-PB | 919..1450 | 983..1526 | 780 | 76.7 | Plus |
| CG32834-RB | 1671 | CG32834-PB | 967..1510 | 935..1466 | 780 | 76.7 | Plus |
| CG32834-RB | 1671 | CG32834-PB | 931..1400 | 1055..1524 | 520 | 74 | Plus |
| CG32834-RB | 1671 | CG32834-PB | 1039..1508 | 947..1416 | 520 | 74 | Plus |
| CG32834-RB | 1671 | CG32834-PB | 919..1004 | 1103..1188 | 220 | 83.7 | Plus |
| CG32834-RB | 1671 | CG32834-PB | 931..1028 | 1091..1188 | 205 | 80.6 | Plus |
| CG32834-RB | 1671 | CG32834-PB | 919..980 | 1127..1188 | 190 | 87.1 | Plus |
| CG32834-RB | 1671 | CG32834-PB | 1185..1330 | 1381..1526 | 190 | 75.3 | Plus |
| CG32834-RB | 1671 | CG32834-PB | 1365..1510 | 1201..1346 | 190 | 75.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:07:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32834-RB | 1752 | CG32834-RB | 19..1686 | 17..1684 | 8340 | 100 | Plus |
| CG32834-RB | 1752 | CG32834-RB | 937..1468 | 983..1526 | 780 | 76.7 | Plus |
| CG32834-RB | 1752 | CG32834-RB | 985..1523 | 935..1473 | 670 | 75 | Plus |
| CG32834-RB | 1752 | CG32834-RB | 949..1418 | 1055..1524 | 520 | 74 | Plus |
| CG32834-RB | 1752 | CG32834-RB | 1057..1526 | 947..1416 | 520 | 74 | Plus |
| CG32834-RB | 1752 | CG32834-RB | 1009..1528 | 935..1466 | 515 | 74.3 | Plus |
| CG32834-RB | 1752 | CG32834-RB | 937..1022 | 1103..1188 | 220 | 83.7 | Plus |
| CG32834-RB | 1752 | CG32834-RB | 949..1046 | 1091..1188 | 205 | 80.6 | Plus |
| CG32834-RB | 1752 | CG32834-RB | 937..998 | 1127..1188 | 190 | 87.1 | Plus |
| CG32834-RB | 1752 | CG32834-RB | 1203..1348 | 1381..1526 | 190 | 75.3 | Plus |
| CG32834-RB | 1752 | CG32834-RB | 1383..1528 | 1201..1346 | 190 | 75.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:07:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22982608..22984275 | 1684..17 | 8340 | 100 | Minus |
| 2R | 25286936 | 2R | 22982826..22983357 | 1526..983 | 780 | 76.7 | Minus |
| 2R | 25286936 | 2R | 22982771..22983309 | 1473..935 | 670 | 75 | Minus |
| 2R | 25286936 | 2R | 22982768..22983237 | 1416..947 | 520 | 74 | Minus |
| 2R | 25286936 | 2R | 22982876..22983345 | 1524..1055 | 520 | 74 | Minus |
| 2R | 25286936 | 2R | 22982766..22983285 | 1466..935 | 515 | 74.3 | Minus |
| 2R | 25286936 | 2R | 22983272..22983357 | 1188..1103 | 220 | 83.7 | Minus |
| 2R | 25286936 | 2R | 22983248..22983345 | 1188..1091 | 205 | 80.6 | Minus |
| 2R | 25286936 | 2R | 22982766..22982911 | 1346..1201 | 190 | 75.3 | Minus |
| 2R | 25286936 | 2R | 22982946..22983091 | 1526..1381 | 190 | 75.3 | Minus |
| 2R | 25286936 | 2R | 22983296..22983357 | 1188..1127 | 190 | 87.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:07:47 has no hits.
BO28935.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:21 Download gff for
BO28935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32834-RB | 1..1668 | 17..1686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:03 Download gff for
BO28935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32834-RB | 19..1686 | 17..1686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:24 Download gff for
BO28935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32834-RB | 19..1686 | 17..1686 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:24 Download gff for
BO28935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22982606..22984275 | 17..1686 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:03 Download gff for
BO28935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18870129..18871798 | 17..1686 | 99 | | Minus |
BO28935.pep Sequence
Translation from 16 to 1702
> BO28935.pep
MIWSVFLFLLAALLRPVRGDLDAQSRIIGGYDVDIEDAPYQAEVIIDGTA
ICSGAIITSDTIITAASCVQSYGSIEVRVGTSSRDYDGTGFLLEVCEIIN
HPQYNCWRFDNNLALLKLCDPLKTSEAIQPISIAEDEPDDGSWCTVSGWG
STSWWGSWWDRCFGSLPDYLQMAWVSVYNREQCAADRGVWFGLWDNGISY
LTLCTHNGAGGCSYDTGAPLVIDGQLVGILSEGGCTTKPDVYANVPWFTG
WIAENTEDEDTTASTSTSSDSSTTVASTTTATVPSTVPSSEPSTEPVAVP
STEPSTSTVPSTISSTLPSTVSSTLPSAVSSTLPSTVSSTLPSAVSSTLP
STLSSTTSSTLPSTVSSTLPSTLASTVSTTLSSTVSSTLPRIEEITVPST
VASTVPSTVQSAEPSSLPSTEQVTIPSTVPSTVTSTIKSTEPSTEASTVP
TTVPSTVTSTIASTEPSTVPNTVTSTIASTEASTVPTTEPSTVTSTIAST
EPSSAASSTVPGNAPSTLASAIPSTPFTTLSPSPSIITTIMTATEPISTE
SPDTEGASFLDH
BO28935.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32834-PB | 556 | CG32834-PB | 1..556 | 1..556 | 2842 | 100 | Plus |
| CG9897-PA | 247 | CG9897-PA | 1..247 | 1..258 | 482 | 44.1 | Plus |
| CG46026-PA | 666 | CG46026-PA | 128..487 | 229..557 | 388 | 34.2 | Plus |
| CG46026-PA | 666 | CG46026-PA | 200..521 | 236..552 | 388 | 35 | Plus |
| CG46026-PA | 666 | CG46026-PA | 256..572 | 256..557 | 371 | 33.8 | Plus |
| CG46026-PA | 666 | CG46026-PA | 122..402 | 261..557 | 370 | 35.9 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 208..501 | 261..554 | 368 | 26.9 | Plus |
| CG46026-PA | 666 | CG46026-PA | 274..588 | 256..551 | 367 | 34.9 | Plus |
| CG46026-PA | 666 | CG46026-PA | 341..657 | 256..557 | 366 | 33.5 | Plus |
| CG46026-PA | 666 | CG46026-PA | 307..610 | 255..554 | 362 | 34.3 | Plus |
| CG46026-PA | 666 | CG46026-PA | 310..640 | 259..557 | 360 | 34.1 | Plus |
| CG46026-PA | 666 | CG46026-PA | 360..664 | 236..546 | 360 | 34.6 | Plus |
| CG32833-PA | 268 | CG32833-PA | 33..268 | 22..257 | 360 | 35.3 | Plus |
| CG46026-PA | 666 | CG46026-PA | 410..666 | 256..528 | 359 | 35.8 | Plus |
| CG46026-PA | 666 | CG46026-PA | 121..368 | 314..557 | 289 | 35.3 | Plus |
| CG46026-PA | 666 | CG46026-PA | 437..666 | 252..492 | 272 | 33.1 | Plus |
| CG46026-PA | 666 | CG46026-PA | 517..665 | 236..388 | 190 | 33.8 | Plus |
