BO28936.complete Sequence
973 bp assembled on 2011-08-24
GenBank Submission: KX797589
> BO28936.complete
GAAGTTATCAGTCGACATGTTCAAAAACCACTTGGAAATGATTGGGCGCA
ATGAGAGCCCCAGCAAGAAGGCGAAATTCTGGCAGTCCTACATCAGGTCC
CTGAAGGGCTCCGAGGATATCCGTGCCCACGAGGCGCCCCGTGCCTCTCG
TCCCTACAGCTCCTACCTGGACTCGCCCTCCTACAGGAGCATCTATGACG
AGCCCGCCACCGCCAATGAGCGCGTCCAGTCCTCTGGCTACAGATATCTG
CCAGTGAGCCGCGACACCTACGGCTACTCGCCCCGTGCCATCTACGATCA
TCACTACAGCCGAACAATTCCAGCTAACTACGACGCAGAGAAGGCCTGGA
ATGATCATCTGAAGCGCATGCAGGAGATCGAGCGCAGGTACCCATCTCGC
TATGGTCTCTACTTGAGGGACAAGCCACTCACGCCCAACTCGCTGGTGCC
CCTGGAGTACGAGCCAGAGGACAAGCTGCTGGCTGAGCTCAACAAGGCTC
GTCGCTCGGCCTCGCCGTTCCGCCCTGCCAGGACGACCCGTGCCGGCAGC
GAGCCGTACGTGCCACCGCCGAGCTACTGGAACCGCGAGGGCAGCGTGCC
ACGCGGAGGACCCTCGGTCTTCGATCGTGCCACCAGCTTGGCCCCGTTCA
CGCGGCCCAGCTTCCGTGCCAGCTCCCTGGAGCCGCTGGACGAACTCTTT
GAACGACTCCCCATCTTTCACCCACGCAACCGCTTCAGGGATCTGCTGAG
CCCCAGCCCCAACTTGCCGATCTCCTCGATTGTGCGCGATCCCTTCTGGT
GGGACGTGGATGACCTGGTGCCCTTCCGCGCCACCTCGGTGCCCCGTGCC
TCGAGCCCCGTGGCCCGGGATTCGTACTTGTCGCCGGTGAAGAACCGCTA
CTTGTGGTCCAAGCACCCAGCTAGACCCTTGACACCTGAGGAAGAGGATT
TATTCGCAAGCTTTCTAGACCAT
BO28936.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:11:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mf-RJ | 942 | CG6803-PJ | 1..939 | 17..955 | 4695 | 100 | Plus |
| Mf-RF | 942 | CG6803-PF | 1..939 | 17..955 | 4695 | 100 | Plus |
| Mf-RD | 939 | CG6803-PD | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mf-RJ | 1954 | CG6803-RJ | 115..1053 | 17..955 | 4695 | 100 | Plus |
| Mf-RF | 2020 | CG6803-RF | 181..1119 | 17..955 | 4695 | 100 | Plus |
| Mf-RD | 1783 | CG6803-RD | 115..1035 | 17..937 | 4605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15172600..15172830 | 935..705 | 1155 | 100 | Minus |
| 3R | 32079331 | 3R | 15178280..15178490 | 317..107 | 1055 | 100 | Minus |
| 3R | 32079331 | 3R | 15174136..15174344 | 705..497 | 1045 | 100 | Minus |
| 3R | 32079331 | 3R | 15176184..15176295 | 497..386 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 15179038..15179129 | 108..17 | 460 | 100 | Minus |
| 3R | 32079331 | 3R | 15176362..15176437 | 389..314 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:11:51 has no hits.
BO28936.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:35:01 Download gff for
BO28936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RJ | 120..1053 | 22..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:38 Download gff for
BO28936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RF | 186..1119 | 22..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:21 Download gff for
BO28936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RF | 186..1119 | 22..957 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:21 Download gff for
BO28936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15178280..15178489 | 108..317 | 100 | <- | Minus |
| 3R | 15179039..15179124 | 22..107 | 100 | | Minus |
| 3R | 15172600..15172830 | 705..935 | 100 | <- | Minus |
| 3R | 15174137..15174343 | 498..704 | 100 | <- | Minus |
| 3R | 15176184..15176293 | 388..497 | 100 | <- | Minus |
| 3R | 15176364..15176433 | 318..387 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:38 Download gff for
BO28936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11001906..11002015 | 388..497 | 100 | <- | Minus |
| arm_3R | 11002086..11002155 | 318..387 | 100 | <- | Minus |
| arm_3R | 11004761..11004846 | 22..107 | 100 | | Minus |
| arm_3R | 11004002..11004211 | 108..317 | 100 | <- | Minus |
| arm_3R | 10998322..10998552 | 705..935 | 100 | <- | Minus |
| arm_3R | 10999859..11000065 | 498..704 | 100 | <- | Minus |
BO28936.pep Sequence
Translation from 16 to 973
> BO28936.pep
MFKNHLEMIGRNESPSKKAKFWQSYIRSLKGSEDIRAHEAPRASRPYSSY
LDSPSYRSIYDEPATANERVQSSGYRYLPVSRDTYGYSPRAIYDHHYSRT
IPANYDAEKAWNDHLKRMQEIERRYPSRYGLYLRDKPLTPNSLVPLEYEP
EDKLLAELNKARRSASPFRPARTTRAGSEPYVPPPSYWNREGSVPRGGPS
VFDRATSLAPFTRPSFRASSLEPLDELFERLPIFHPRNRFRDLLSPSPNL
PISSIVRDPFWWDVDDLVPFRATSVPRASSPVARDSYLSPVKNRYLWSKH
PARPLTPEEEDLFASFLDH
BO28936.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:22:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mf-PJ | 313 | CG6803-PJ | 1..313 | 1..313 | 1678 | 100 | Plus |
| Mf-PF | 313 | CG6803-PF | 1..313 | 1..313 | 1678 | 100 | Plus |
| Mf-PD | 312 | CG6803-PD | 1..312 | 1..312 | 1648 | 98.7 | Plus |
| Mf-PO | 310 | CG6803-PO | 1..310 | 1..312 | 1620 | 97.8 | Plus |
| Mf-PB | 365 | CG6803-PB | 1..365 | 1..313 | 1615 | 85.8 | Plus |
