BO28937.complete Sequence
541 bp assembled on 2011-08-24
GenBank Submission: KX797041
> BO28937.complete
GAAGTTATCAGTCGACATGAAGTTTATGGCAATATGCCTATTGGCAAATA
TTGGCTACATACTTGGCACTACAATTGGCCAGCTTAATGACGAAGCCACA
ATTCGACTAAAGGGACTTGTGGAGAAATATAAACTGCAAGCTCTTAGCAA
TCCCGAATTCTCTCAGTGGATTGGCAAACTTGAGAAAACTAGCAAGTCGA
GAAGATTGGAAGACAAAATGAAGGTCAAAGCTGAATTTAAAAACTACGAC
GAACGTCGCTTGCAATTGGAAAATAAAATTAGGGAACGCATTACGGCGAT
CGATGACCTCATATCCGATATTATGGCCAAAGTCCCGATAAAGGATAAAG
GGTGTCTCAAGTATTACCAACGCCAGAAAAGATCCCTTAAATTGGCCCAC
AATTTTTCGAATTTAACTAAGCAAACAAACCTCATACGCAACTCGAAACA
ATGCGAAACAACTAAAGTGCAGTCTAGTGAACTAAGTGAAAGCTCTGAAA
ATCCGGATGAGTATAGTTATTACGCAAGCTTTCTAGACCAT
BO28937.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:17:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sfp38D-RB | 510 | CG42606-PB | 1..507 | 17..523 | 2535 | 100 | Plus |
Sfp38D-RA | 510 | CG42606-PA | 1..507 | 17..523 | 2535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sfp38D-RB | 1234 | CG3-RB | 24..530 | 17..523 | 2535 | 100 | Plus |
Sfp38D-RA | 640 | CG42606-RA | 24..530 | 17..523 | 2535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20641049..20641512 | 60..523 | 2320 | 100 | Plus |
2L | 23513712 | 2L | 20640940..20640982 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib4 | 2656 | transib4 TRANSIB4 2656bp | 2095..2186 | 443..533 | 115 | 59.8 | Plus |
Bari1 | 1728 | Bari1 DMBARI1 1728bp AKA(S55767) Derived from X67681 (g7640) (Rel. 36, Last updated, Version 6). | 209..331 | 523..400 | 112 | 60.9 | Minus |
BO28937.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:35:08 Download gff for
BO28937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sfp38D-RA | 24..530 | 17..525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:56:59 Download gff for
BO28937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sfp38D-RA | 24..530 | 17..525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:37 Download gff for
BO28937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sfp38D-RA | 24..530 | 17..525 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:37 Download gff for
BO28937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20640940..20640982 | 17..59 | 100 | -> | Plus |
2L | 20641049..20641512 | 60..525 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:56:59 Download gff for
BO28937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20640940..20640982 | 17..59 | 100 | -> | Plus |
arm_2L | 20641049..20641512 | 60..525 | 99 | | Plus |
BO28937.pep Sequence
Translation from 16 to 541
> BO28937.pep
MKFMAICLLANIGYILGTTIGQLNDEATIRLKGLVEKYKLQALSNPEFSQ
WIGKLEKTSKSRRLEDKMKVKAEFKNYDERRLQLENKIRERITAIDDLIS
DIMAKVPIKDKGCLKYYQRQKRSLKLAHNFSNLTKQTNLIRNSKQCETTK
VQSSELSESSENPDEYSYYASFLDH
BO28937.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:22:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sfp38D-PB | 169 | CG42606-PB | 1..169 | 1..169 | 858 | 100 | Plus |
Sfp38D-PA | 169 | CG42606-PA | 1..169 | 1..169 | 858 | 100 | Plus |
CG17472-PA | 159 | CG17472-PA | 1..142 | 1..146 | 232 | 36.1 | Plus |
CG31680-PA | 147 | CG31680-PA | 1..129 | 1..146 | 211 | 33.6 | Plus |