BO28940.complete Sequence
769 bp assembled on 2011-08-24
> BO28940.complete
GAAGTTATCAGTCGACATGTCGGTGCAATGGAAAATTGTCATAATGAGCT
TCTTTCTGTTCAGTACCGCGCACGCTGGAGGATATTGTGGACCCAACAAG
ATATATGCGTGTGTGCCTACGCTATTTTGTAAAGATGGTCGCAGCACGCA
AAGAAATCCCGCTGCTCACTTCAACAGGCAGTGCTTTTCGTTTGAATCTT
GCTGTGACGTTAATAGGGTAATTTATGGAATGCGGTACACTGGAGGAGAT
TTCGAGCCAGGTCCATACGAACAAATCAGCGAGCCATTCAACAATGCTAG
TGGAAAAACTTCTGGCACAAACAGTCAACAGTCAACTGGTAATACGGGTG
GCACTAGTCCGACCTTGAAAAAAAAGGGCGGAGTGTCATCTATAACGAAC
ATTCAAAATACTAATAATGGCGGAGGCAAAAATTTTACAACAAATAGTCA
AATGCCGAGTTATACGATGAAAAGTCAGCCATCCAATAACGCAGGTGGAA
AAACCACTACTGCAAACAATCAGGCACCCAGTGACTCAGATGGAAAAACT
TTTACACACAGTACAAATTTACATGCTCATAGTTATCTTAACAATAATTC
CGGAAAAACTAACTTAGGAAACCCATCTACGGCTAATACTAAAAATACAA
AAAGTCCAAATTATCATCATTATCAAAATCATAATTACAATCCCAGTGGC
AATTTGGGCAGGGATGTTGGAGTTCATAGACTATCTTCAAACATTGCAAG
CTTTCTAGACCATTCGTGG
BO28940.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:17:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42876-RA | 732 | CG42876-PA | 1..729 | 17..745 | 3645 | 100 | Plus |
CG42876-RB | 732 | CG42876-PB | 1..729 | 17..745 | 3645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42876-RA | 1104 | CG42876-RA | 11..740 | 16..745 | 3650 | 100 | Plus |
CG42876-RB | 1513 | CG42876-RB | 11..740 | 16..745 | 3650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15811344..15811872 | 745..217 | 2645 | 100 | Minus |
2L | 23513712 | 2L | 15811928..15812131 | 219..16 | 1020 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 16:17:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
looper1 | 1881 | looper1 LOOPER1_DM 1881bp | 1054..1140 | 547..631 | 124 | 65.2 | Plus |
BO28940.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:35:09 Download gff for
BO28940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42876-RA | 12..745 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:12 Download gff for
BO28940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42876-RB | 12..745 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:49 Download gff for
BO28940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42876-RB | 12..745 | 17..753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:49 Download gff for
BO28940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15811930..15812130 | 17..217 | 100 | | Minus |
2L | 15811338..15811871 | 218..753 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:12 Download gff for
BO28940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15811930..15812130 | 17..217 | 100 | | Minus |
arm_2L | 15811338..15811871 | 218..753 | 99 | <- | Minus |
BO28940.pep Sequence
Translation from 16 to 769
> BO28940.pep
MSVQWKIVIMSFFLFSTAHAGGYCGPNKIYACVPTLFCKDGRSTQRNPAA
HFNRQCFSFESCCDVNRVIYGMRYTGGDFEPGPYEQISEPFNNASGKTSG
TNSQQSTGNTGGTSPTLKKKGGVSSITNIQNTNNGGGKNFTTNSQMPSYT
MKSQPSNNAGGKTTTANNQAPSDSDGKTFTHSTNLHAHSYLNNNSGKTNL
GNPSTANTKNTKSPNYHHYQNHNYNPSGNLGRDVGVHRLSSNIASFLDHS
W
BO28940.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:22:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42876-PA | 243 | CG42876-PA | 1..243 | 1..243 | 1330 | 100 | Plus |
CG42876-PB | 243 | CG42876-PB | 1..243 | 1..243 | 1330 | 100 | Plus |