Clone BO28940 Report

Search the DGRC for BO28940

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:289
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG42876-RA
Protein status:BO28940.pep: Imported from assembly
Sequenced Size:769

Clone Sequence Records

BO28940.complete Sequence

769 bp assembled on 2011-08-24

> BO28940.complete
GAAGTTATCAGTCGACATGTCGGTGCAATGGAAAATTGTCATAATGAGCT
TCTTTCTGTTCAGTACCGCGCACGCTGGAGGATATTGTGGACCCAACAAG
ATATATGCGTGTGTGCCTACGCTATTTTGTAAAGATGGTCGCAGCACGCA
AAGAAATCCCGCTGCTCACTTCAACAGGCAGTGCTTTTCGTTTGAATCTT
GCTGTGACGTTAATAGGGTAATTTATGGAATGCGGTACACTGGAGGAGAT
TTCGAGCCAGGTCCATACGAACAAATCAGCGAGCCATTCAACAATGCTAG
TGGAAAAACTTCTGGCACAAACAGTCAACAGTCAACTGGTAATACGGGTG
GCACTAGTCCGACCTTGAAAAAAAAGGGCGGAGTGTCATCTATAACGAAC
ATTCAAAATACTAATAATGGCGGAGGCAAAAATTTTACAACAAATAGTCA
AATGCCGAGTTATACGATGAAAAGTCAGCCATCCAATAACGCAGGTGGAA
AAACCACTACTGCAAACAATCAGGCACCCAGTGACTCAGATGGAAAAACT
TTTACACACAGTACAAATTTACATGCTCATAGTTATCTTAACAATAATTC
CGGAAAAACTAACTTAGGAAACCCATCTACGGCTAATACTAAAAATACAA
AAAGTCCAAATTATCATCATTATCAAAATCATAATTACAATCCCAGTGGC
AATTTGGGCAGGGATGTTGGAGTTCATAGACTATCTTCAAACATTGCAAG
CTTTCTAGACCATTCGTGG

BO28940.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG42876-RA 732 CG42876-PA 1..729 17..745 3645 100 Plus
CG42876-RB 732 CG42876-PB 1..729 17..745 3645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG42876-RA 1104 CG42876-RA 11..740 16..745 3650 100 Plus
CG42876-RB 1513 CG42876-RB 11..740 16..745 3650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15811344..15811872 745..217 2645 100 Minus
2L 23513712 2L 15811928..15812131 219..16 1020 100 Minus
Blast to na_te.dros performed 2014-11-26 16:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
looper1 1881 looper1 LOOPER1_DM 1881bp 1054..1140 547..631 124 65.2 Plus

BO28940.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:35:09 Download gff for BO28940.complete
Subject Subject Range Query Range Percent Splice Strand
CG42876-RA 12..745 17..753 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:12 Download gff for BO28940.complete
Subject Subject Range Query Range Percent Splice Strand
CG42876-RB 12..745 17..753 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:49 Download gff for BO28940.complete
Subject Subject Range Query Range Percent Splice Strand
CG42876-RB 12..745 17..753 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:49 Download gff for BO28940.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15811930..15812130 17..217 100   Minus
2L 15811338..15811871 218..753 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:12 Download gff for BO28940.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15811930..15812130 17..217 100   Minus
arm_2L 15811338..15811871 218..753 99 <- Minus

BO28940.pep Sequence

Translation from 16 to 769

> BO28940.pep
MSVQWKIVIMSFFLFSTAHAGGYCGPNKIYACVPTLFCKDGRSTQRNPAA
HFNRQCFSFESCCDVNRVIYGMRYTGGDFEPGPYEQISEPFNNASGKTSG
TNSQQSTGNTGGTSPTLKKKGGVSSITNIQNTNNGGGKNFTTNSQMPSYT
MKSQPSNNAGGKTTTANNQAPSDSDGKTFTHSTNLHAHSYLNNNSGKTNL
GNPSTANTKNTKSPNYHHYQNHNYNPSGNLGRDVGVHRLSSNIASFLDHS
W

BO28940.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG42876-PA 243 CG42876-PA 1..243 1..243 1330 100 Plus
CG42876-PB 243 CG42876-PB 1..243 1..243 1330 100 Plus