BO28942.complete Sequence
1884 bp assembled on 2011-09-19
> BO28942.complete
GAAGTTATCAGTCGACATGTATGTATCGGACGAGCATCGCTATTACCGAA
AGGCGCGAAGAAAGTTTTCTTTGAAGGCATACGGCTTATTTGTTCTGTGG
CTCATTTTAGCTCTGGCCCAATGGCTGGTAATAGCTTTTATAGAGGATGC
AAGGACAACTTTCACGTCGTTATACTATATCTGCCTTGCGACTTTTGCTT
TGGCCATCTTGATCTTTGCGCTCTTTATTTTTATTGAGAAGGTTCGATTC
ATCAAAGGTCTCAACTTTATCATGTCACTGATAATAGTGGAGCTTCAGAT
CATATCCACATTTGCTCTAGTCGCAATCAGTTGGTGGCCGGATGTCCTGA
CATTTTTTGCAGTCGCATTAATTTTAATGGTACTCTTTCTTCTAATAGGA
GTATTTCTACCAGCACGAGCCGACCTCACCCTAGATATAGCGGTTTTATT
TATATTAGCATTTCTTTTCCTGATTGTGGCCTGTTTTATACTATTATTTG
AACTACTTGTGAGAATAACCATTCCCTATGCCTATTTAGTGGTGGAAATA
TCTATAACCTTTACGATTCTACTGTTCGTAATGTACCATGCCCAAACAAT
CAATGGAAACCGATTTGCTGAGATGCGATTGAACGACTTTTTCTTGGGAT
CTCTGATTCTGTTTCACGACTTCCTTATCATTTTCTGGCTGACATTCTAT
TGGCAGATCCATTATAGACCTATCACGCCTGATACCTGGTTAGAGACATC
TACACCATATTACAATGGTACAATCAGAACCAACGATACTTATAAAAGTC
TTGATGGTGATGGAACAACACTAGCACCGTGGTTCACCAGAGGATTTGAT
GACGGTTATGGTGGTGATTCAAATGCAAAAGACTATCCTGAGATTCCAAG
CGGTAGAGGAAATCCAGGAAATCGGAACCCTTATGACACAGATTCCATGG
ACGGGCACAGGCCAAATAATAGGGATTCCACAAAAGATTGGTCAGTTTAC
AATCAAAGGCCAAAGAATGGATTTAGGAATCGTGGAAGGTCCCGAACTAA
AGGTCCGGAAACGAAAACCGTACACCACAGACATCGTAAACCGGACGAAT
GGGACCCTGAATATATTACGCAAGGTATCGACATGGTAGTGCCCTTTGAT
GACCGTTATGGCGATAATTCAAAAGATGTCATAGAAGATGATGAAGTGCA
TCGGATTCCCGATGAGGATATAGGTCCCACAATGGAGGATGATTACACGG
ATGTACCCATTAATGTTCATTTTGGACAGCCGATTGATAAGTTTTATCAA
AATCCCAACACTGGACCAAAAGTAGATATTGGTGATGCCGAAGGAAAATC
GGCAGCTGGTTTTGGTGATCCAAACGTCGATTTTCCTCCAGCAGACTACC
AGCCAAAGTCAACCGACGCTTCACATATATATATTATTCCTAAGGCAAGA
CCCACCAGGAGGGATTCTTATTCAATGAATAATGAACGACAAAATTACAT
TGAAAATGAAAAGATTGAAAGTGTTACTCCTGCTGACGAGAAAAGTGATC
TAAGTCTTCGACAAAATAAAAGGGATTACAACTTGCAAAAGGATGAAATG
ACAGGACTAACCACACAACAATTTTCATTGGGACGAAAAGACTTTCATGG
AGTAAGCCCACCTCCTCCATGGGAAGAGCTATCCGATGATGAAATTCGAA
AATTATTAGACCAGAGGATCCATGAAGATAAGTATCGACCAAATGCAGAC
CGTTGGGCTGAGCCATTAATTACCAGAGAGCCTTATCCAATAAACCTTCC
AGACTATGAAAAGCTTGTAATGAATGTCAGTTCAAGCATATTGCAAGCAA
GCTTTCTAGACCATTCGTTTGGCGCGAAAGAGGG
BO28942.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:46:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42570-RA | 1833 | CG42570-PA | 1..1830 | 17..1846 | 9150 | 100 | Plus |
| CG42570-RB | 1830 | CG42570-PB | 1..1827 | 17..1846 | 9070 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:46:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42570-RA | 1977 | CG42570-RA | 105..1934 | 17..1846 | 9150 | 100 | Plus |
| CG42570-RB | 1974 | CG42570-RB | 105..1931 | 17..1846 | 9070 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:46:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15718993..15720030 | 809..1846 | 5190 | 100 | Plus |
| 3L | 28110227 | 3L | 15718702..15718937 | 574..809 | 1180 | 100 | Plus |
| 3L | 28110227 | 3L | 15718495..15718650 | 419..574 | 780 | 100 | Plus |
| 3L | 28110227 | 3L | 15718098..15718245 | 142..289 | 740 | 100 | Plus |
| 3L | 28110227 | 3L | 15718304..15718436 | 287..419 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 15717923..15718047 | 17..141 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:46:17 has no hits.
BO28942.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:23 Download gff for
BO28942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42570-RA | 105..1944 | 17..1858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:50 Download gff for
BO28942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42570-RA | 105..1944 | 17..1858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:12 Download gff for
BO28942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42570-RA | 105..1944 | 17..1858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:12 Download gff for
BO28942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15718703..15718937 | 575..809 | 100 | -> | Plus |
| 3L | 15718495..15718650 | 419..574 | 100 | -> | Plus |
| 3L | 15717923..15718047 | 17..141 | 100 | -> | Plus |
| 3L | 15718098..15718242 | 142..286 | 100 | -> | Plus |
| 3L | 15718304..15718435 | 287..418 | 100 | -> | Plus |
| 3L | 15718994..15720040 | 810..1858 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:50 Download gff for
BO28942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15711023..15711147 | 17..141 | 100 | -> | Plus |
| arm_3L | 15711198..15711342 | 142..286 | 100 | -> | Plus |
| arm_3L | 15711404..15711535 | 287..418 | 100 | -> | Plus |
| arm_3L | 15711595..15711750 | 419..574 | 100 | -> | Plus |
| arm_3L | 15711803..15712037 | 575..809 | 100 | -> | Plus |
| arm_3L | 15712094..15713140 | 810..1858 | 99 | | Plus |
BO28942.pep Sequence
Translation from 16 to 1882
> BO28942.pep
MYVSDEHRYYRKARRKFSLKAYGLFVLWLILALAQWLVIAFIEDARTTFT
SLYYICLATFALAILIFALFIFIEKVRFIKGLNFIMSLIIVELQIISTFA
LVAISWWPDVLTFFAVALILMVLFLLIGVFLPARADLTLDIAVLFILAFL
FLIVACFILLFELLVRITIPYAYLVVEISITFTILLFVMYHAQTINGNRF
AEMRLNDFFLGSLILFHDFLIIFWLTFYWQIHYRPITPDTWLETSTPYYN
GTIRTNDTYKSLDGDGTTLAPWFTRGFDDGYGGDSNAKDYPEIPSGRGNP
GNRNPYDTDSMDGHRPNNRDSTKDWSVYNQRPKNGFRNRGRSRTKGPETK
TVHHRHRKPDEWDPEYITQGIDMVVPFDDRYGDNSKDVIEDDEVHRIPDE
DIGPTMEDDYTDVPINVHFGQPIDKFYQNPNTGPKVDIGDAEGKSAAGFG
DPNVDFPPADYQPKSTDASHIYIIPKARPTRRDSYSMNNERQNYIENEKI
ESVTPADEKSDLSLRQNKRDYNLQKDEMTGLTTQQFSLGRKDFHGVSPPP
PWEELSDDEIRKLLDQRIHEDKYRPNADRWAEPLITREPYPINLPDYEKL
VMNVSSSILQASFLDHSFGAKE
BO28942.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42570-PA | 610 | CG42570-PA | 1..610 | 1..610 | 3256 | 100 | Plus |
| CG42570-PB | 609 | CG42570-PB | 1..609 | 1..610 | 3238 | 99.8 | Plus |
| CG12209-PA | 285 | CG12209-PA | 9..281 | 8..301 | 620 | 43.9 | Plus |
| CG42571-PB | 292 | CG42571-PB | 8..259 | 14..263 | 550 | 42.1 | Plus |
| CG34315-PB | 266 | CG34315-PB | 4..224 | 3..227 | 431 | 39.1 | Plus |
