BO28953.complete Sequence
445 bp assembled on 2011-08-24
GenBank Submission: KX793820
> BO28953.complete
GAAGTTATCAGTCGACATGTGCTGCAATGCCAACCGCCAGCTATTATGTA
TCTTTACCGGAGCATTGGCGATACTGATATCAACTTTATGTTTAGGATTC
ATGCTTTACCGGCTAGGCACGACTGGTATAAACCATTGGGAGGAGGCGTA
CCTGGTAGCCTGGGCTGTCATTATTTTAGCAGCGGTACCTCTAATTGTAG
GAGCAATAAAAGAAATTCGCTATCTTTTGGTGATTTGGATAGTAGTCGCT
TTAATAAGCGGCATTTCTCTGATAGTTATTCAAATAGAAATGTTTCATAG
CTTTTTTCATAAGGATCCTGATACAGCCTTTCATATTCTCGGTGGTATAG
TCATTATAGTTTTCGTATTATTGCTCTGCTGTTTTCTATACTTCCCATAT
ACGTATGCGCGTGAGCTGGAAGGAGATGCAAGCTTTCTAGACCAT
BO28953.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:19:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42690-RB | 414 | CG42690-PB | 1..411 | 17..427 | 2055 | 100 | Plus |
CG42690-RA | 414 | CG42690-PA | 1..411 | 17..427 | 2055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43195-RA | 1281 | CG43195-RA | 198..608 | 17..427 | 2055 | 100 | Plus |
CG42690-RB | 1286 | CG42690-RB | 198..608 | 17..427 | 2055 | 100 | Plus |
CG42690-RA | 761 | CG42690-RA | 198..608 | 17..427 | 2055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19945230..19945386 | 368..212 | 785 | 100 | Minus |
2R | 25286936 | 2R | 19945580..19945680 | 117..17 | 505 | 100 | Minus |
2R | 25286936 | 2R | 19945438..19945536 | 212..114 | 495 | 100 | Minus |
2R | 25286936 | 2R | 19945111..19945169 | 427..369 | 295 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 16:19:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 2896..2975 | 418..335 | 105 | 60.7 | Minus |
BO28953.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:35:11 Download gff for
BO28953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42690-RA | 10..420 | 17..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:49 Download gff for
BO28953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42690-RA | 10..420 | 17..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:15 Download gff for
BO28953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42690-RA | 198..608 | 17..429 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:15 Download gff for
BO28953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19945439..19945533 | 117..211 | 100 | <- | Minus |
2R | 19945581..19945680 | 17..116 | 100 | | Minus |
2R | 19945109..19945169 | 369..429 | 96 | <- | Minus |
2R | 19945230..19945386 | 212..368 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:49 Download gff for
BO28953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15832944..15833038 | 117..211 | 100 | <- | Minus |
arm_2R | 15833086..15833185 | 17..116 | 100 | | Minus |
arm_2R | 15832614..15832674 | 369..429 | 96 | <- | Minus |
arm_2R | 15832735..15832891 | 212..368 | 100 | <- | Minus |
BO28953.pep Sequence
Translation from 16 to 445
> BO28953.pep
MCCNANRQLLCIFTGALAILISTLCLGFMLYRLGTTGINHWEEAYLVAWA
VIILAAVPLIVGAIKEIRYLLVIWIVVALISGISLIVIQIEMFHSFFHKD
PDTAFHILGGIVIIVFVLLLCCFLYFPYTYARELEGDASFLDH
BO28953.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:23:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42690-PB | 137 | CG42690-PB | 1..137 | 1..137 | 713 | 100 | Plus |
CG42690-PA | 137 | CG42690-PA | 1..137 | 1..137 | 713 | 100 | Plus |
CG42691-PA | 140 | CG42691-PA | 1..135 | 1..135 | 336 | 48.1 | Plus |
CG43195-PA | 138 | CG43195-PA | 1..133 | 1..135 | 238 | 35.6 | Plus |
CG43195-PB | 129 | CG43195-PB | 1..124 | 1..135 | 199 | 33.3 | Plus |