BO28954.complete Sequence
892 bp assembled on 2011-08-24
GenBank Submission: KX798049
> BO28954.complete
GAAGTTATCAGTCGACATGAGCACCTCACTAAGATCCAGCCGAGGAATCA
AGCTTATGAAGTCGGGCCATTTCTCAGATGTATGCATTCGCATAGATTGT
ATTAGCTTCCGGTGCCACAAAATCATCTTAGCCTGTGCTTCTGAGTTTTT
TGAGAGATTATTTCAAGAAGATTCGGAGGAATTTTTGTTAGATGGAACAA
CCCCAGAAGTTTTTCAGATATTTCTTGATTTTATATACGCTCCTAACGAT
GACCAATTCGGCAATCTTGAACCGGATGTATTGATGTGTCTTCTGAAGTG
CGCAAATATGTGGCTCGCTGTGGAAATAGAAGAAAGATGCATCGACATTC
TATTAGATCTATCCCCTGACATGGATCCGGATGCCCTTATTGCACTTTTT
GCAGTGTCGCATTGTGTGGATCACAAAGTATTAATGGAACAGTCTATTGG
AGTCCTGCAACATATATGGAGAAACGAAATGGACTGTCCATCAACTGTCA
GAATGGAAGTCGACTGCTTCGGAGAATATTTTAAAAACACCTCGGGAATG
CTTTCTCCGCGTAGGCGCTTTGTCATGGTGGAAAACTGGATAAAAGGCAA
TGATTTGAATAATAGACCGTGCTCTCAAAAAGATAAAATTAACCAAATTA
TTAAGAGCATTAACTTTTTGGAAATGTCATTGGAGGACTTTTACAATGGT
CCAGGAAAGTCTAACGTTTTGCCCGATTCAGACAAGTTCGAAATAATGTA
TAAACTTGCCCGTTCAAATAATGAATGGACTGTTATATTGGACGAAAGGG
ATCGAGATAGGTACTACATAATTGTTTTTGTGAAGAAGAAGTCGACTAAA
TTTGTGTTTTATTTAAAGTTGATAGCAAGCTTTCTAGACCAT
BO28954.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:19:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43120-RA | 861 | CG43120-PA | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43120-RA | 1270 | CG43120-RA | 53..910 | 17..874 | 4290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14382517..14382939 | 452..874 | 2115 | 100 | Plus |
| 3L | 28110227 | 3L | 14382048..14382469 | 32..453 | 2110 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:19:35 has no hits.
BO28954.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:35:12 Download gff for
BO28954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43120-RA | 53..910 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:00 Download gff for
BO28954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43120-RA | 53..910 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:27 Download gff for
BO28954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43120-RA | 53..910 | 17..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:27 Download gff for
BO28954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14381965..14381981 | 17..33 | 100 | -> | Plus |
| 3L | 14382050..14382467 | 34..451 | 100 | -> | Plus |
| 3L | 14382517..14382939 | 452..876 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:00 Download gff for
BO28954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14375065..14375081 | 17..33 | 100 | -> | Plus |
| arm_3L | 14375150..14375567 | 34..451 | 100 | -> | Plus |
| arm_3L | 14375617..14376039 | 452..876 | 99 | | Plus |
BO28954.pep Sequence
Translation from 16 to 892
> BO28954.pep
MSTSLRSSRGIKLMKSGHFSDVCIRIDCISFRCHKIILACASEFFERLFQ
EDSEEFLLDGTTPEVFQIFLDFIYAPNDDQFGNLEPDVLMCLLKCANMWL
AVEIEERCIDILLDLSPDMDPDALIALFAVSHCVDHKVLMEQSIGVLQHI
WRNEMDCPSTVRMEVDCFGEYFKNTSGMLSPRRRFVMVENWIKGNDLNNR
PCSQKDKINQIIKSINFLEMSLEDFYNGPGKSNVLPDSDKFEIMYKLARS
NNEWTVILDERDRDRYYIIVFVKKKSTKFVFYLKLIASFLDH
BO28954.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:23:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43120-PA | 286 | CG43120-PA | 1..286 | 1..286 | 1516 | 100 | Plus |
| CG11714-PC | 371 | CG11714-PC | 31..304 | 30..250 | 246 | 24.5 | Plus |
| CG11714-PD | 383 | CG11714-PD | 43..316 | 30..250 | 246 | 24.5 | Plus |
| CG11714-PA | 383 | CG11714-PA | 43..316 | 30..250 | 246 | 24.5 | Plus |
