BO28959.complete Sequence
799 bp assembled on 2011-08-24
GenBank Submission: KX799857
> BO28959.complete
GAAGTTATCAGTCGACATGGACAATAAGAAGGATATATACAATCTGTGGG
TGCAGTACACGACAAAGAATGATGAAACCCACTTCCGGCAATTTGTGGCC
CGCTTCGTGGCCATTTGGAGGAGCCAACTGCAGCTAGACTTTCAGGCGGA
AAATTGCCCGATGTGGCACGAGGTTCAGCCGGATAGTGGTCCCCACTTGG
GCCGCCTCCCGGATGAACTCCTGCCCGCCATCGGTAAATTCATCATTGTA
GCCAGAGATGTTTGCGAAACGGAAGGGAAACTGGAGGAGCAGGCCATTGA
AGAAGTAGCCATACTCGTGGATTGTCTGGTGATCGTGTGCCGGCACTTTG
ATAACATACTGTCCATCATCAAGTATGAATACAAGCCGAATTTGATCGCC
ATACTCTCCAGGGTGTTCAAACAACAAATGGAGCTGCCGCAGAGCGTGCC
CGCAATAAGCCACCTGTTTAGCAGTTTCTCGGCATTCCTGGAAGTCATGT
ATGATCCATATCTGACGTGGCGCAGCTTCGTGCGAGGCCAGTCAGCTGAC
TACAGTCGTCTTTCATATAAACCCCACTCGGTTCATGTGGAAATTGTCCC
CTTTATTTATGATTGCTTTCAGGAGGAGAAGCTCATCCGATATGCGGAAA
TTGGCGAAAGCCTGCTAAACATCCTGGGCGCTGTGATTTGCGGCTCACAG
GTAGCGCCAGAAAGCGTCTCCAGTCCCTTCCTGTGTAGTCCTTTCTCTCT
TAAAAACCGTTTAATTATTAACCTCACTTCCGCAAGCTTTCTAGACCAT
BO28959.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:55:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43367-RD | 8139 | CG43367-PD | 1..684 | 17..700 | 3420 | 100 | Plus |
CG43367-RC | 8265 | CG43367-PC | 1..684 | 17..700 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:55:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43367-RE | 10170 | CG43367-RE | 293..1057 | 17..781 | 3825 | 100 | Plus |
CG43367-RF | 9817 | CG43367-RF | 1..704 | 78..781 | 3520 | 100 | Plus |
CG43367-RD | 9842 | CG43367-RD | 293..976 | 17..700 | 3420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:55:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4194555..4194914 | 65..424 | 1800 | 100 | Plus |
3L | 28110227 | 3L | 4194978..4195164 | 425..611 | 935 | 100 | Plus |
3L | 28110227 | 3L | 4195298..4195468 | 611..781 | 855 | 100 | Plus |
3L | 28110227 | 3L | 4194285..4194335 | 17..67 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:55:07 has no hits.
BO28959.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:51 Download gff for
BO28959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1308-RE | 293..1057 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:52 Download gff for
BO28959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43367-RE | 293..1057 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:58 Download gff for
BO28959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43367-RE | 293..1057 | 17..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:58 Download gff for
BO28959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4194285..4194335 | 17..67 | 100 | -> | Plus |
3L | 4194558..4194914 | 68..424 | 100 | -> | Plus |
3L | 4194978..4195164 | 425..611 | 100 | -> | Plus |
3L | 4195299..4195468 | 612..783 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:52 Download gff for
BO28959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4194285..4194335 | 17..67 | 100 | -> | Plus |
arm_3L | 4194558..4194914 | 68..424 | 100 | -> | Plus |
arm_3L | 4194978..4195164 | 425..611 | 100 | -> | Plus |
arm_3L | 4195299..4195468 | 612..783 | 98 | | Plus |
BO28959.pep Sequence
Translation from 16 to 799
> BO28959.pep
MDNKKDIYNLWVQYTTKNDETHFRQFVARFVAIWRSQLQLDFQAENCPMW
HEVQPDSGPHLGRLPDELLPAIGKFIIVARDVCETEGKLEEQAIEEVAIL
VDCLVIVCRHFDNILSIIKYEYKPNLIAILSRVFKQQMELPQSVPAISHL
FSSFSAFLEVMYDPYLTWRSFVRGQSADYSRLSYKPHSVHVEIVPFIYDC
FQEEKLIRYAEIGESLLNILGAVICGSQVAPESVSSPFLCSPFSLKNRLI
INLTSASFLDH
BO28959.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:22:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43367-PC | 2754 | CG1308-PB | 1..255 | 1..257 | 1210 | 92.2 | Plus |
CG43367-PD | 2712 | CG43367-PD | 1..241 | 1..235 | 1203 | 95.9 | Plus |