Clone BO28960 Report

Search the DGRC for BO28960

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:289
Well:60
Vector:pDNR-Dual
Associated Gene/Transcriptspz4-RB
Protein status:BO28960.pep: Imported from assembly
Sequenced Size:1825

Clone Sequence Records

BO28960.complete Sequence

1825 bp assembled on 2011-09-19

GenBank Submission: KX800110

> BO28960.complete
GAAGTTATCAGTCGACATGGTGCGCACCCAAATGGATAGGCGATCGCCGA
TCACTAGACTAATAACGATCGAGGTTATCGGGTATTTGCTGATCCTAATG
ACGATTGCTCTACCACTTTCTTCCGCCGGATTTGGCTTCGACTCGGCCAA
CTCGTGCAGTCCCAATGGGAAGATATCGCGACGTGGTAGGGCCCAGATCC
TGGCTGCGATTCCCTGCGACCTGGGTCAGCAGGCGTTCTGCCACCTGCCA
GGATCCGCTTATCCATGGCACGCTGTACGACGATTCGTGCACGAGAACCA
GGGTCTGATGAAGCGCATGTACGGCGATGTAAGGCACATTTCCATCCTGC
GGGATGAGATCCAGAACAACGAGGTGGATGCGGACGACATTGAGGAGACG
GCGGAGCGATATAGCAAGGATGGCGGACGGCGGAGTGCCAAGTATCTGAT
GAACAACAGAGATCGCGATCGTGAGCGTGAAGATTTCGGAAGCTTCAAGA
GCAACGATGTGCTAATGGAGCCGCACTTTCGACCTGTCTCCACGATTACC
ACAAGTACGACTAAGGCTACGACGACTACAACCACTGCTCCGGAAATAGT
TAGTAGCACCACGGAACGAGTTCCAAATGAGGTTACCGACACAACGCCTG
GAAATACCAATAGTACGATAAGTACTACTAAAGGAACTGCGCCACCTTTA
CACGAAAAACCCGAATCGGAAACAGACATTGTGGAGATCCAGCCCAGTCC
AGAATCGAACAGCGTCTACGAAGTGGTGTCCCCTTCCGTTCTTTCAACCA
CGTCCACTGCCAAACCTTCGTCCGCAGCTGGTGAAAATATACAGATCATT
GACTCACCACAGTTGGGGCTTCGTAATCTAAGCGCAGAGGCAAGTCCATC
ACAAGAACCACCCACAGCCACAACTGGGAAGCCCACATCTGTGCCCAAGA
GCACGACACCTTTACCCATCAGGAAAAGGAAACCGGCAGAGACGACCACC
AGTGCAGCCAGTCCAAAAGTCTCGAGTACCATTTCGACACCAACCACAAC
AACAGCAACTTTGCTGATACGTCGCAATGTAACCAAGTACTCACCCGCAT
CCGTGACCACGCCCGTCAGCTTCGCCTCGCTCTTCTCCGGCACCTCCAGC
GGGCTTTTTAGTCCGGAGAGGTTGCGCAGACCCTTGACCACGACGAGCAG
TACAAGTGCTCCAGCTTCATCCCCTCCGGCGGGTGGAACTCCAGCGAGCA
GCTCTACCGGAAGCGCCAGCAAGTCTGGACTGCTAAGGGAGGGTCAGCTG
TTTCAGGATGCCATGAAGCAAGAGCCCGTAGCTGTGGCCAGCAACTTGCG
TGGAGTAAATGCCTGTCCCGTGAAGGATGAAGTGGTGGCTCCCTTTTGGG
CAAACAATACCCGCGGCGAGGTCTTAGCCCTCCTCAATCTCTATCCCTTC
GAGCAGTACGTCCACTGGGAGAAGTGCACCCACGAGTTCAAGCAAATGTT
CTGCCGCGATGGATGCAGATGTGAACAGCAGTACCGCCTCCACAGATTGT
TGGCCTACGATCCGCATAACGAGTGCCGCGGGATATTCTCCGACTGGTTC
CGATTCCCGTCCAGCTGCATATGCAAGTGCTACAATATACCAATGGAGTT
CCGCGCAACATCACGTAGTCCACGGTCCGACAGTCGCTTCGATGCTCCAA
AATCCGATCCCATCGAGGCTGCCGAGGCGGAGGTCCAACGGGCCATTTAC
GAACATGCCACGGAAGAGTGGTATCGCCCACGTGATGAGTTCGATTTCTT
GGAGGACGCAAGCTTTCTAGACCAT

BO28960.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
spz4-RB 1794 CG14928-PB 1..1791 17..1807 8955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
spz4-RB 2954 CG14928-RB 409..2199 17..1807 8955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11506095..11507384 67..1356 6450 100 Plus
2L 23513712 2L 11507444..11507894 1357..1807 2255 100 Plus
2L 23513712 2L 11502123..11502173 17..67 255 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:03:24 has no hits.

BO28960.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:18 Download gff for BO28960.complete
Subject Subject Range Query Range Percent Splice Strand
spz4-RB 373..2163 17..1809 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:20 Download gff for BO28960.complete
Subject Subject Range Query Range Percent Splice Strand
spz4-RB 409..2199 17..1809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:46 Download gff for BO28960.complete
Subject Subject Range Query Range Percent Splice Strand
spz4-RB 409..2199 17..1809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:46 Download gff for BO28960.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11502123..11502173 17..67 100 -> Plus
2L 11506096..11507384 68..1356 100 -> Plus
2L 11507444..11507894 1357..1809 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:20 Download gff for BO28960.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11502123..11502173 17..67 100 -> Plus
arm_2L 11506096..11507384 68..1356 100 -> Plus
arm_2L 11507444..11507894 1357..1809 99   Plus

BO28960.pep Sequence

Translation from 16 to 1825

> BO28960.pep
MVRTQMDRRSPITRLITIEVIGYLLILMTIALPLSSAGFGFDSANSCSPN
GKISRRGRAQILAAIPCDLGQQAFCHLPGSAYPWHAVRRFVHENQGLMKR
MYGDVRHISILRDEIQNNEVDADDIEETAERYSKDGGRRSAKYLMNNRDR
DREREDFGSFKSNDVLMEPHFRPVSTITTSTTKATTTTTTAPEIVSSTTE
RVPNEVTDTTPGNTNSTISTTKGTAPPLHEKPESETDIVEIQPSPESNSV
YEVVSPSVLSTTSTAKPSSAAGENIQIIDSPQLGLRNLSAEASPSQEPPT
ATTGKPTSVPKSTTPLPIRKRKPAETTTSAASPKVSSTISTPTTTTATLL
IRRNVTKYSPASVTTPVSFASLFSGTSSGLFSPERLRRPLTTTSSTSAPA
SSPPAGGTPASSSTGSASKSGLLREGQLFQDAMKQEPVAVASNLRGVNAC
PVKDEVVAPFWANNTRGEVLALLNLYPFEQYVHWEKCTHEFKQMFCRDGC
RCEQQYRLHRLLAYDPHNECRGIFSDWFRFPSSCICKCYNIPMEFRATSR
SPRSDSRFDAPKSDPIEAAEAEVQRAIYEHATEEWYRPRDEFDFLEDASF
LDH

BO28960.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
spz4-PB 597 CG14928-PB 1..597 1..597 3108 100 Plus
spz3-PA 611 CG7104-PA 519..609 447..538 281 50 Plus
Sgs1-PA 1286 CG3047-PA 224..474 173..419 217 29.9 Plus
Sgs1-PA 1286 CG3047-PA 464..713 173..413 209 28.9 Plus
Sgs1-PA 1286 CG3047-PA 400..649 173..413 204 28.5 Plus
Sgs1-PA 1286 CG3047-PA 256..489 173..413 202 28.7 Plus
Sgs1-PA 1286 CG3047-PA 426..681 172..413 201 29.3 Plus
Sgs1-PA 1286 CG3047-PA 800..1066 173..419 201 29.5 Plus
Sgs1-PA 1286 CG3047-PA 928..1167 173..418 201 28.5 Plus
Sgs1-PA 1286 CG3047-PA 480..729 173..413 200 28.1 Plus
Sgs1-PA 1286 CG3047-PA 560..809 173..413 200 28.1 Plus
CG46026-PA 666 CG46026-PA 299..555 175..418 200 28.8 Plus
Sgs1-PA 1286 CG3047-PA 384..617 173..418 199 28.1 Plus
Sgs1-PA 1286 CG3047-PA 346..570 172..419 198 29.5 Plus
Sgs1-PA 1286 CG3047-PA 544..777 173..413 197 28.2 Plus
Sgs1-PA 1286 CG3047-PA 576..825 173..413 197 27.7 Plus
CG34220-PA 726 CG34220-PA 123..359 175..414 197 26.4 Plus
Sgs1-PA 1286 CG3047-PA 512..761 173..413 196 28.8 Plus
Sgs1-PA 1286 CG3047-PA 538..793 172..413 196 28 Plus
Sgs1-PA 1286 CG3047-PA 608..841 173..413 196 28.2 Plus
Sgs1-PA 1286 CG3047-PA 624..857 173..413 196 28.2 Plus
Sgs1-PA 1286 CG3047-PA 640..873 173..413 196 28.2 Plus
Sgs1-PA 1286 CG3047-PA 656..889 173..413 196 28.2 Plus
Sgs1-PA 1286 CG3047-PA 672..905 173..413 196 28.2 Plus
Sgs1-PA 1286 CG3047-PA 688..921 173..413 196 28.2 Plus
CG46026-PA 666 CG46026-PA 403..640 174..418 196 26.9 Plus
CG46026-PA 666 CG46026-PA 232..469 173..413 195 27.6 Plus
Sgs1-PA 1286 CG3047-PA 896..1146 173..419 193 29.4 Plus
CG46026-PA 666 CG46026-PA 369..609 174..420 192 28.4 Plus
Sgs1-PA 1286 CG3047-PA 704..937 173..413 191 27.8 Plus
CG46026-PA 666 CG46026-PA 318..571 174..413 189 29 Plus
CG46026-PA 666 CG46026-PA 286..555 175..417 186 27 Plus
Sgs1-PA 1286 CG3047-PA 720..953 173..413 185 27.4 Plus
Sgs1-PA 1286 CG3047-PA 298..549 172..414 182 27.6 Plus
Sgs1-PA 1286 CG3047-PA 736..969 173..413 182 27.4 Plus
CG46026-PA 666 CG46026-PA 204..453 178..418 182 28.4 Plus
Sgs1-PA 1286 CG3047-PA 848..1098 173..419 180 28.6 Plus
Sgs1-PA 1286 CG3047-PA 190..442 173..419 176 25.5 Plus
CG46026-PA 666 CG46026-PA 452..664 175..404 171 30.5 Plus
CG46026-PA 666 CG46026-PA 120..351 187..418 167 28.9 Plus
CG46026-PA 666 CG46026-PA 421..651 173..413 167 29.4 Plus
CG46026-PA 666 CG46026-PA 158..385 173..418 163 27.9 Plus
CG46026-PA 666 CG46026-PA 120..330 198..420 162 28.7 Plus