BO28960.complete Sequence
1825 bp assembled on 2011-09-19
GenBank Submission: KX800110
> BO28960.complete
GAAGTTATCAGTCGACATGGTGCGCACCCAAATGGATAGGCGATCGCCGA
TCACTAGACTAATAACGATCGAGGTTATCGGGTATTTGCTGATCCTAATG
ACGATTGCTCTACCACTTTCTTCCGCCGGATTTGGCTTCGACTCGGCCAA
CTCGTGCAGTCCCAATGGGAAGATATCGCGACGTGGTAGGGCCCAGATCC
TGGCTGCGATTCCCTGCGACCTGGGTCAGCAGGCGTTCTGCCACCTGCCA
GGATCCGCTTATCCATGGCACGCTGTACGACGATTCGTGCACGAGAACCA
GGGTCTGATGAAGCGCATGTACGGCGATGTAAGGCACATTTCCATCCTGC
GGGATGAGATCCAGAACAACGAGGTGGATGCGGACGACATTGAGGAGACG
GCGGAGCGATATAGCAAGGATGGCGGACGGCGGAGTGCCAAGTATCTGAT
GAACAACAGAGATCGCGATCGTGAGCGTGAAGATTTCGGAAGCTTCAAGA
GCAACGATGTGCTAATGGAGCCGCACTTTCGACCTGTCTCCACGATTACC
ACAAGTACGACTAAGGCTACGACGACTACAACCACTGCTCCGGAAATAGT
TAGTAGCACCACGGAACGAGTTCCAAATGAGGTTACCGACACAACGCCTG
GAAATACCAATAGTACGATAAGTACTACTAAAGGAACTGCGCCACCTTTA
CACGAAAAACCCGAATCGGAAACAGACATTGTGGAGATCCAGCCCAGTCC
AGAATCGAACAGCGTCTACGAAGTGGTGTCCCCTTCCGTTCTTTCAACCA
CGTCCACTGCCAAACCTTCGTCCGCAGCTGGTGAAAATATACAGATCATT
GACTCACCACAGTTGGGGCTTCGTAATCTAAGCGCAGAGGCAAGTCCATC
ACAAGAACCACCCACAGCCACAACTGGGAAGCCCACATCTGTGCCCAAGA
GCACGACACCTTTACCCATCAGGAAAAGGAAACCGGCAGAGACGACCACC
AGTGCAGCCAGTCCAAAAGTCTCGAGTACCATTTCGACACCAACCACAAC
AACAGCAACTTTGCTGATACGTCGCAATGTAACCAAGTACTCACCCGCAT
CCGTGACCACGCCCGTCAGCTTCGCCTCGCTCTTCTCCGGCACCTCCAGC
GGGCTTTTTAGTCCGGAGAGGTTGCGCAGACCCTTGACCACGACGAGCAG
TACAAGTGCTCCAGCTTCATCCCCTCCGGCGGGTGGAACTCCAGCGAGCA
GCTCTACCGGAAGCGCCAGCAAGTCTGGACTGCTAAGGGAGGGTCAGCTG
TTTCAGGATGCCATGAAGCAAGAGCCCGTAGCTGTGGCCAGCAACTTGCG
TGGAGTAAATGCCTGTCCCGTGAAGGATGAAGTGGTGGCTCCCTTTTGGG
CAAACAATACCCGCGGCGAGGTCTTAGCCCTCCTCAATCTCTATCCCTTC
GAGCAGTACGTCCACTGGGAGAAGTGCACCCACGAGTTCAAGCAAATGTT
CTGCCGCGATGGATGCAGATGTGAACAGCAGTACCGCCTCCACAGATTGT
TGGCCTACGATCCGCATAACGAGTGCCGCGGGATATTCTCCGACTGGTTC
CGATTCCCGTCCAGCTGCATATGCAAGTGCTACAATATACCAATGGAGTT
CCGCGCAACATCACGTAGTCCACGGTCCGACAGTCGCTTCGATGCTCCAA
AATCCGATCCCATCGAGGCTGCCGAGGCGGAGGTCCAACGGGCCATTTAC
GAACATGCCACGGAAGAGTGGTATCGCCCACGTGATGAGTTCGATTTCTT
GGAGGACGCAAGCTTTCTAGACCAT
BO28960.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:03:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz4-RB | 1794 | CG14928-PB | 1..1791 | 17..1807 | 8955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:03:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz4-RB | 2954 | CG14928-RB | 409..2199 | 17..1807 | 8955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:03:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11506095..11507384 | 67..1356 | 6450 | 100 | Plus |
2L | 23513712 | 2L | 11507444..11507894 | 1357..1807 | 2255 | 100 | Plus |
2L | 23513712 | 2L | 11502123..11502173 | 17..67 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:03:24 has no hits.
BO28960.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:18 Download gff for
BO28960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz4-RB | 373..2163 | 17..1809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:20 Download gff for
BO28960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz4-RB | 409..2199 | 17..1809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:46 Download gff for
BO28960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz4-RB | 409..2199 | 17..1809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:46 Download gff for
BO28960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11502123..11502173 | 17..67 | 100 | -> | Plus |
2L | 11506096..11507384 | 68..1356 | 100 | -> | Plus |
2L | 11507444..11507894 | 1357..1809 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:20 Download gff for
BO28960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11502123..11502173 | 17..67 | 100 | -> | Plus |
arm_2L | 11506096..11507384 | 68..1356 | 100 | -> | Plus |
arm_2L | 11507444..11507894 | 1357..1809 | 99 | | Plus |
BO28960.pep Sequence
Translation from 16 to 1825
> BO28960.pep
MVRTQMDRRSPITRLITIEVIGYLLILMTIALPLSSAGFGFDSANSCSPN
GKISRRGRAQILAAIPCDLGQQAFCHLPGSAYPWHAVRRFVHENQGLMKR
MYGDVRHISILRDEIQNNEVDADDIEETAERYSKDGGRRSAKYLMNNRDR
DREREDFGSFKSNDVLMEPHFRPVSTITTSTTKATTTTTTAPEIVSSTTE
RVPNEVTDTTPGNTNSTISTTKGTAPPLHEKPESETDIVEIQPSPESNSV
YEVVSPSVLSTTSTAKPSSAAGENIQIIDSPQLGLRNLSAEASPSQEPPT
ATTGKPTSVPKSTTPLPIRKRKPAETTTSAASPKVSSTISTPTTTTATLL
IRRNVTKYSPASVTTPVSFASLFSGTSSGLFSPERLRRPLTTTSSTSAPA
SSPPAGGTPASSSTGSASKSGLLREGQLFQDAMKQEPVAVASNLRGVNAC
PVKDEVVAPFWANNTRGEVLALLNLYPFEQYVHWEKCTHEFKQMFCRDGC
RCEQQYRLHRLLAYDPHNECRGIFSDWFRFPSSCICKCYNIPMEFRATSR
SPRSDSRFDAPKSDPIEAAEAEVQRAIYEHATEEWYRPRDEFDFLEDASF
LDH
BO28960.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz4-PB | 597 | CG14928-PB | 1..597 | 1..597 | 3108 | 100 | Plus |
spz3-PA | 611 | CG7104-PA | 519..609 | 447..538 | 281 | 50 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 224..474 | 173..419 | 217 | 29.9 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 464..713 | 173..413 | 209 | 28.9 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 400..649 | 173..413 | 204 | 28.5 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 256..489 | 173..413 | 202 | 28.7 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 426..681 | 172..413 | 201 | 29.3 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 800..1066 | 173..419 | 201 | 29.5 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 928..1167 | 173..418 | 201 | 28.5 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 480..729 | 173..413 | 200 | 28.1 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 560..809 | 173..413 | 200 | 28.1 | Plus |
CG46026-PA | 666 | CG46026-PA | 299..555 | 175..418 | 200 | 28.8 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 384..617 | 173..418 | 199 | 28.1 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 346..570 | 172..419 | 198 | 29.5 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 544..777 | 173..413 | 197 | 28.2 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 576..825 | 173..413 | 197 | 27.7 | Plus |
CG34220-PA | 726 | CG34220-PA | 123..359 | 175..414 | 197 | 26.4 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 512..761 | 173..413 | 196 | 28.8 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 538..793 | 172..413 | 196 | 28 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 608..841 | 173..413 | 196 | 28.2 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 624..857 | 173..413 | 196 | 28.2 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 640..873 | 173..413 | 196 | 28.2 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 656..889 | 173..413 | 196 | 28.2 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 672..905 | 173..413 | 196 | 28.2 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 688..921 | 173..413 | 196 | 28.2 | Plus |
CG46026-PA | 666 | CG46026-PA | 403..640 | 174..418 | 196 | 26.9 | Plus |
CG46026-PA | 666 | CG46026-PA | 232..469 | 173..413 | 195 | 27.6 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 896..1146 | 173..419 | 193 | 29.4 | Plus |
CG46026-PA | 666 | CG46026-PA | 369..609 | 174..420 | 192 | 28.4 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 704..937 | 173..413 | 191 | 27.8 | Plus |
CG46026-PA | 666 | CG46026-PA | 318..571 | 174..413 | 189 | 29 | Plus |
CG46026-PA | 666 | CG46026-PA | 286..555 | 175..417 | 186 | 27 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 720..953 | 173..413 | 185 | 27.4 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 298..549 | 172..414 | 182 | 27.6 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 736..969 | 173..413 | 182 | 27.4 | Plus |
CG46026-PA | 666 | CG46026-PA | 204..453 | 178..418 | 182 | 28.4 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 848..1098 | 173..419 | 180 | 28.6 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 190..442 | 173..419 | 176 | 25.5 | Plus |
CG46026-PA | 666 | CG46026-PA | 452..664 | 175..404 | 171 | 30.5 | Plus |
CG46026-PA | 666 | CG46026-PA | 120..351 | 187..418 | 167 | 28.9 | Plus |
CG46026-PA | 666 | CG46026-PA | 421..651 | 173..413 | 167 | 29.4 | Plus |
CG46026-PA | 666 | CG46026-PA | 158..385 | 173..418 | 163 | 27.9 | Plus |
CG46026-PA | 666 | CG46026-PA | 120..330 | 198..420 | 162 | 28.7 | Plus |