BO28962.complete Sequence
690 bp assembled on 2011-08-24
> BO28962.complete
GAAGTTATCAGTCGACATGTCTGGAGCGGAGTCCCTTTTTACTTGGGTGT
ACGGACCGGGTGTCACGCGAGGGGGCAGTGTGGTGGGGCATCATCAGCCC
GAGGCCCTGCGACCCGTGCTCTTTCTGTTCTATACCCTGGAAACCATCTT
CAACATGTTCTGCATGGGATATCACATCTCGGGCTTTCAGGCCATCGAAT
TGCATGTGTTCGAATGGGATACGAGCGTCAATATATGCACAGGTAACACA
CCCGCCGTCGTCACGGAGATCTGGAAGTCCTCGGCGGCAGCCATCGTCTT
TATCCTGATATCCTTGAGCACAATGTGGGACGCGGAGCGGCAGTTTTACG
TGTTCTTTTTTGCGAGCGAGCTTGGCGATAAGAATTCACATGCATTTGTG
GAAGACCGCCCAATACACCCGATCTTCCACTACCTTCGTGGTATGTCCAT
CTCCTCGCTGACCTGCGGAATACTCTACCTGCTGCACGCCACTATCATGA
TCGACGTCAAGCTTACCAATGACCGGAACCAAGGAGAGAGCAAGGGTACC
TATATGCCCATACCTCTTTTCGTCCTGGGGCGATTCATCCACAGGAAACT
AAGCGCCTACGATTGGTTTCGGGAGTTCTGCGAGAACGATATCATTTACT
TGGCAAGCTTTCTAGACCATTCGTGGGGCCCGCAAAGGGG
BO28962.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:20:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34433-RB | 639 | CG34433-PB | 1..636 | 17..652 | 3180 | 100 | Plus |
| CG34433-RA | 702 | CG34433-PA | 270..699 | 223..652 | 2150 | 100 | Plus |
| CG34433-RA | 702 | CG34433-PA | 1..207 | 17..223 | 1035 | 100 | Plus |
| CG34432-RA | 642 | CG34432-PA | 264..356 | 265..357 | 195 | 80.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34433-RB | 835 | CG34433-RB | 8..643 | 17..652 | 3180 | 100 | Plus |
| CG34433-RA | 898 | CG34433-RA | 277..706 | 223..652 | 2150 | 100 | Plus |
| CG34433-RA | 898 | CG34433-RA | 8..214 | 17..223 | 1035 | 100 | Plus |
| CG34432-RA | 723 | CG34432-RA | 280..372 | 265..357 | 195 | 80.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30650237..30650666 | 223..652 | 2150 | 100 | Plus |
| 3R | 32079331 | 3R | 30649968..30650174 | 17..223 | 1035 | 100 | Plus |
| 3R | 32079331 | 3R | 30649430..30649522 | 265..357 | 195 | 80.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:20:06 has no hits.
BO28962.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:35:13 Download gff for
BO28962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34433-RB | 8..647 | 17..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:14 Download gff for
BO28962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34433-RB | 8..647 | 17..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:39 Download gff for
BO28962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34433-RB | 8..647 | 17..658 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:39 Download gff for
BO28962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30649968..30650174 | 17..223 | 100 | -> | Plus |
| 3R | 30650238..30650670 | 224..658 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:14 Download gff for
BO28962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26475690..26475896 | 17..223 | 100 | -> | Plus |
| arm_3R | 26475960..26476392 | 224..658 | 99 | | Plus |
BO28962.pep Sequence
Translation from 16 to 688
> BO28962.pep
MSGAESLFTWVYGPGVTRGGSVVGHHQPEALRPVLFLFYTLETIFNMFCM
GYHISGFQAIELHVFEWDTSVNICTGNTPAVVTEIWKSSAAAIVFILISL
STMWDAERQFYVFFFASELGDKNSHAFVEDRPIHPIFHYLRGMSISSLTC
GILYLLHATIMIDVKLTNDRNQGESKGTYMPIPLFVLGRFIHRKLSAYDW
FREFCENDIIYLASFLDHSWGPQR
BO28962.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:23:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34433-PB | 212 | CG34433-PB | 1..212 | 1..212 | 1136 | 100 | Plus |
| CG34433-PA | 233 | CG34433-PA | 1..233 | 1..212 | 1104 | 91 | Plus |
| CG34432-PA | 213 | CG34432-PA | 16..211 | 27..210 | 499 | 51.5 | Plus |
| CG14315-PA | 217 | CG14315-PA | 8..214 | 31..209 | 295 | 29.4 | Plus |
