BO28963.complete Sequence
1354 bp assembled on 2011-08-24
GenBank Submission: KX796211
> BO28963.complete
GAAGTTATCAGTCGACATGATAAGAGAAAAGCTATTCGGAAAACTGCTCC
TCCTGCTTGCAATGGTTTTACCATTGGGATCAGGACAAAACAGCACCCTC
AAGATCAACACAAACGTGAAAGATATTGAAGCTGGGGTTGTGGCTCTGCC
CTCCATCCAGGGACCCGGGAACATCTGCATACGCGAGGAGCCATATGTGG
AGCACGTCCAGGTGCCAGAGATGCAGCCGGTGCGTGTGCGGACCTCCAGT
TGGTGCATGGAGATCCCGCCGAGATGCGCCACCTTCAAGACGGAAATGCG
CGAGGTGATGAGGGTCCAGAAATTGAACAAAACGCGAACAGTTCGCTTCT
GCTGTCAAGGATACGAGGGAAATTTGTCGGATAGTCAAGCCACATGCAAG
CCCATTTGCAGGGGCGGCTGTGGGCGTGGCAGTTGCGTAATGCCTGACAT
TTGCAGCTGCGAAGAGGGCTATATTGGCAAACATTGCACACAGCGCTGTG
ATCACGATCGCTGGGGACTGGACTGCAAGAATCTATGCCAATGTCAAAAT
GGAGCAGCCTGCGACAATAAATCGGGACTTTGTCACTGCATTGCCGGTTG
GACAGGACAATTTTGCGAGCTGCCCTGTCCACAGGGAACTTACGGCATCA
TGTGCCGCAAGGCTTGCGACTGCGATGAGAAGCCTTGCAATCCACAAACG
GGTGCTTGCATCCAGCAGGATCAACCTCTCCAACTGAATGTGAGCCACGT
CATCGTGGAGACTGTGAACTCCACGCTGGAGAAAATGGGTATTATACCGC
GTCCCACCACGCCCGTTCCCCTGCCGGAGGTCATAGTAATTAAGCAACCG
ACCAGCAATGAAAATGCCCAACACTCACCAAAGATCATTGTCCACCAATC
GAGCAGTGACCTACTCGAGAATCTCCATACGGCTGCAGCCGCCGGTGTTC
CCACTCCGGAGGTCATACACGTCATCACCAATGGGATCACCTCGCCACAG
GAGCATTTGGCCGGATTCGTTGGAGGTGAGGCCAATTCAAGTCAGACGGC
GACAGCTGATCATCAGTCCGGCTTGGTGGTCACACTGGTCAGCATAATGC
TCCTCCTGCTGGTCGCCATTGCGGTGGGTTCACTGTATGTGTACCGGAGG
TATCACCACAAAAATGCCGCAGTATACAATGCCAACGGAACGGTGACCAC
GCTGCCTGCAAATCCGGAAGTGGTTCTCACCGAAGCCGCGGTCCTGGGAA
AAAACTTCCACGAACCACTGCCTGAACCGCCCGTGGCCTTTGCGGTCACG
CCCCAATCAAACGAGGGTATCACAACCAGAGCTATAGCAAGCTTTCTAGA
CCAT
BO28963.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:20:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NimA-RD | 1323 | CG42282-PD | 1..1320 | 17..1336 | 6600 | 100 | Plus |
| NimA-RE | 1698 | CG42282-PE | 1..1316 | 17..1336 | 6505 | 99.7 | Plus |
| NimA-RF | 1698 | CG42282-PF | 1..1316 | 17..1336 | 6505 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NimA-RD | 2877 | CG42282-RD | 312..1631 | 17..1336 | 6600 | 100 | Plus |
| NimA-RE | 2873 | CG42282-RE | 312..1627 | 17..1336 | 6505 | 99.7 | Plus |
| NimA-RF | 2185 | CG42282-RF | 66..1381 | 17..1336 | 6505 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13961249..13961956 | 613..1320 | 3540 | 100 | Plus |
| 2L | 23513712 | 2L | 13957850..13958152 | 17..319 | 1515 | 100 | Plus |
| 2L | 23513712 | 2L | 13960828..13961006 | 317..495 | 895 | 100 | Plus |
| 2L | 23513712 | 2L | 13961064..13961181 | 495..612 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:20:58 has no hits.
BO28963.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:35:14 Download gff for
BO28963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nimA-RD | 312..1631 | 17..1338 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:34 Download gff for
BO28963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimA-RD | 312..1631 | 17..1338 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:59 Download gff for
BO28963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimA-RD | 312..1631 | 17..1338 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:59 Download gff for
BO28963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13961064..13961181 | 495..612 | 100 | -> | Plus |
| 2L | 13957850..13958152 | 17..319 | 100 | -> | Plus |
| 2L | 13960831..13961005 | 320..494 | 100 | -> | Plus |
| 2L | 13961249..13961956 | 613..1320 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:34 Download gff for
BO28963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13957850..13958152 | 17..319 | 100 | -> | Plus |
| arm_2L | 13960831..13961005 | 320..494 | 100 | -> | Plus |
| arm_2L | 13961064..13961181 | 495..612 | 100 | -> | Plus |
| arm_2L | 13961249..13961956 | 613..1320 | 100 | -> | Plus |
BO28963.pep Sequence
Translation from 16 to 1354
> BO28963.pep
MIREKLFGKLLLLLAMVLPLGSGQNSTLKINTNVKDIEAGVVALPSIQGP
GNICIREEPYVEHVQVPEMQPVRVRTSSWCMEIPPRCATFKTEMREVMRV
QKLNKTRTVRFCCQGYEGNLSDSQATCKPICRGGCGRGSCVMPDICSCEE
GYIGKHCTQRCDHDRWGLDCKNLCQCQNGAACDNKSGLCHCIAGWTGQFC
ELPCPQGTYGIMCRKACDCDEKPCNPQTGACIQQDQPLQLNVSHVIVETV
NSTLEKMGIIPRPTTPVPLPEVIVIKQPTSNENAQHSPKIIVHQSSSDLL
ENLHTAAAAGVPTPEVIHVITNGITSPQEHLAGFVGGEANSSQTATADHQ
SGLVVTLVSIMLLLLVAIAVGSLYVYRRYHHKNAAVYNANGTVTTLPANP
EVVLTEAAVLGKNFHEPLPEPPVAFAVTPQSNEGITTRAIASFLDH
BO28963.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:23:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NimA-PD | 440 | CG42282-PD | 1..440 | 1..440 | 2365 | 100 | Plus |
| NimA-PE | 565 | CG42282-PE | 1..433 | 1..433 | 2332 | 100 | Plus |
| NimA-PF | 565 | CG42282-PF | 1..433 | 1..433 | 2332 | 100 | Plus |
| drpr-PD | 613 | CG2086-PD | 20..224 | 44..244 | 388 | 36.7 | Plus |
| drpr-PF | 976 | CG2086-PF | 20..247 | 44..232 | 372 | 31.8 | Plus |
| drpr-PD | 613 | CG2086-PD | 254..327 | 146..219 | 181 | 36.5 | Plus |
