BO28965.complete Sequence
1360 bp assembled on 2011-08-24
> BO28965.complete
GAAGTTATCAGTCGACATGCTTATTCTAGCCCTTGTTGTGTGGCTCGCTT
ACCCAAATCTTTGCTTGGCCCAGTACCACCTTAATCCTCCCAAGACCATC
TTTCCGGACTTCAAGTTTCCCTCGGATTATAGGGATACACCCATAGTTTT
TGAATGGAAGAATCTGCAGTACGGCTTCCCCAGTGAACAGGAACGCGATC
AGGTGCTCCGGAATGGTCGCTATAATCCGGATAGTCCCATACCCATAGAC
ATCGATGTTTATTATCCACCTAATGGCGGTCCACCTAGACACTTTGTGAC
ATCGCCTCGCTTCGGACAGGGAGTTCCCTTTTCCCTGGGCTATGTGACCA
ATGTGCAGCGGGAGAACGGAAGTGAAATCCAGGCCTATCCTAGCTACCAG
TGGCACAGTAGCCACGGAGCGAATTGCGATGGTCTAACGTCCGTGTACCG
GGTTCATATCGATGCCTGTGGTCAGATGTGGGTGCTGGACAGCGGTGAAA
TTGAGTTCGTGCAGCACTGTGCCCCACAGGTTATGGTCTTCGACTTGGCC
ACCGATCAGTTGATCCATCGGTATCGTCTGCCCGAAACATCCTATAAGGC
GAAGGTCAGTAGATTTGTGAATATATTTGCAGACATCAGGGACCCACCGC
CAAGTGGGCAGTGCAAGGATGTATTTGCCTATCTGGCGGATCCCACAAGT
AAGGCCATAGTGGTGTACGATGTCGTGGGTCAGAGCTCCTGGCGCATCGA
GAACAAATTCACCTATCCGGATGCTAAGTTCGGAACGCACACAGTGGCTG
GTGAGAGTTTTGAGCTGCTCGATGGACCTTTGGCTTTGGCGACGACTCCT
TTGGGACTGGGATTGCGCCGCCATCTGATTTTCCACGCGCTGTCCAACGA
ACTGGAGCTGGCCATTCCTTTGGATATCCTAAATAATGCCACGAATTGGC
AAAAGGGTCTGAGCTCCTCCCTGTCGGAATTCACTGTCTTGGGTAAGAGA
GGGATTCAGTGTGCCTCGCATGCGATAAGCAGACAAGGATTCCTGTTCTG
TGGCTTCCTGGAGCCAATCGGAATTTTCGGCTGGGACATACGAAGGCCCT
ACAATCGCGAAAATGTCAAGCTACTTGCTATTAATCCGGCTACGCTGCAA
TTTGTGAGTGGCATGAAGATTGTCCGCAGACCTGCTGATGGACGGGAGGA
ACTGTGGCTGCTCTCCGATCGACTGCAGAAGATATTCGCCGGAACCATTG
ACTACAGGGAAATCAATTATCGGGTGATGCGGTGCGATGTTGATGACCTG
TTGCAGGGGCGGGGCTGCTTTGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCAAAGCGGG
BO28965.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:21:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-e2-RB | 1308 | CG17044-PB | 1..1305 | 17..1321 | 6525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-e2-RB | 1571 | CG17044-RB | 66..1370 | 17..1321 | 6525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:21:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13405310..13406372 | 1321..259 | 5285 | 99.8 | Minus |
| 3R | 32079331 | 3R | 13406614..13406868 | 273..19 | 1260 | 99.6 | Minus |
Blast to na_te.dros performed 2014-11-26 16:21:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ivk | 5402 | Ivk IVK 5402bp | 2433..2501 | 866..797 | 140 | 68.6 | Minus |
BO28965.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:35:15 Download gff for
BO28965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-e2-RB | 35..1339 | 17..1321 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:44 Download gff for
BO28965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-e2-RB | 35..1339 | 17..1321 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:06 Download gff for
BO28965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-e2-RB | 66..1370 | 17..1321 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:06 Download gff for
BO28965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13405310..13406361 | 270..1321 | 100 | <- | Minus |
| 3R | 13406618..13406870 | 17..269 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:44 Download gff for
BO28965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9231032..9232083 | 270..1321 | 100 | <- | Minus |
| arm_3R | 9232340..9232592 | 17..269 | 99 | | Minus |
BO28965.pep Sequence
Translation from 16 to 1360
> BO28965.pep
MLILALVVWLAYPNLCLAQYHLNPPKTIFPDFKFPSDYRDTPIVFEWKNL
QYGFPSEQERDQVLRNGRYNPDSPIPIDIDVYYPPNGGPPRHFVTSPRFG
QGVPFSLGYVTNVQRENGSEIQAYPSYQWHSSHGANCDGLTSVYRVHIDA
CGQMWVLDSGEIEFVQHCAPQVMVFDLATDQLIHRYRLPETSYKAKVSRF
VNIFADIRDPPPSGQCKDVFAYLADPTSKAIVVYDVVGQSSWRIENKFTY
PDAKFGTHTVAGESFELLDGPLALATTPLGLGLRRHLIFHALSNELELAI
PLDILNNATNWQKGLSSSLSEFTVLGKRGIQCASHAISRQGFLFCGFLEP
IGIFGWDIRRPYNRENVKLLAINPATLQFVSGMKIVRRPADGREELWLLS
DRLQKIFAGTIDYREINYRVMRCDVDDLLQGRGCFASFLDHSFGAQSG
BO28965.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:23:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-e2-PB | 435 | CG17044-PB | 1..435 | 1..435 | 2342 | 100 | Plus |
| yellow-d2-PA | 412 | CG9891-PA | 25..411 | 44..434 | 1123 | 53.3 | Plus |
| yellow-d-PA | 432 | CG9889-PA | 1..416 | 1..431 | 871 | 40.3 | Plus |
| yellow-e3-PA | 409 | CG17045-PA | 27..397 | 46..434 | 552 | 32.1 | Plus |
| yellow-h-PA | 463 | CG1629-PA | 55..440 | 43..434 | 513 | 30.9 | Plus |
