BO28966.complete Sequence
1528 bp assembled on 2011-08-24
GenBank Submission: KX795145
> BO28966.complete
GAAGTTATCAGTCGACATGGCGGGAATTCAGCTGCAATCGGGATGCACGA
TGGTCGTGACGGTGGTGCTCCTGCTGCAGGTGCTTGTGATGGACCAGGTG
CTCGGCCAGGGTCCACCGCAGACTCAAGTGTGTCCGGAGCAGAGCGAGAT
CGCGCCCTGCATCTGCACGGTGAAGAAGAACGGGCTGGACATCCTGTGCG
AGACCACCGATCTGGCGCACATCACCAAGTCGATGGGCACGCTGAAGGGC
AAGAGTCCCATCATCTTCTACCTGAAGCTTCGCCACAACAATCTGCCCAA
GCTGCAGGGCTTCGTCTTCCTGGCCCTTGACATCCGTCACCTGACCATCC
ACAACAGCAGCCTGGCGGCCATCGAGGAGAACGCCCTCAGCTCGCTGGGA
GCGGGACTGACGCAGCTGGATGTGTCCCTCAACCAAATGAAGACGGTGCC
CTCGCAGGCTCTGCAACATCTGTTCCACCTGTTGATCCTTAATCTGAACC
ACAATAAAATCACCGTGATCCACAACAATGCCTTCGAGGGACTGGAGACC
CTGGAGATTCTGACGCTCTACGAGAACAAGATTACACAGATCGATCCCGA
GGCTTTCCGAGGACTTGAGGACCATATTAAGCGCCTGAATTTGGGTGGCA
ACGATCTTACCAATATCCCGCAGAAAGCTCTTTCCATTTTGAGCACCTTA
AAGAAACTGGAGATTCAGGAGAACAAGATACGAACTATCAGCGAAGGCGA
TTTCGAAGGCTTGCAGAGCCTGGACTCATTGATTTTGGCCCACAACATGA
TCACCACCGTGCCTGCCAATGTGTTTAGTCACCTCACCCTGCTAAACTCC
TTGGAGCTGGAGGGCAATAAGATCAGTGTGATTGACAAGGATGCCTTCAA
GGGCCTAGAGGAGAACCTGCAATATCTGCGCCTGGGTGATAACCAGATCC
ACACTATTCCCAGCGAGGCACTGCGTCCGCTGCACCGCCTTCGCCACTTG
GACTTGCGCAACAACAATATCAATGTTTTGGCTGAAGATGCCTTCACTGG
CTTTGGAGATTCCCTGACTTTCCTCAACCTGCAGAAGAACGACATCAAGG
TTCTGCCCAGTCTTCTGTTTGAGAACCTCAACTCGCTGGAAACGCTGAAC
CTGCAGAACAACAAGTTGCAGCGCATTCCGCAGGACATAATGGAGCCCGT
CATCGACACCCTTCGCATCATCGATATCACCGATAACCCGCTGAACTGCT
CCTGCGAGCTGACCTGGTTCCCCAAGCTGCTGGAGGACCTGAAGAACAAG
GACGACGAAATGTCGCAGAAGAAGAAGCCGCTGTGCCACATGTCGCTGGA
CAACCGCGAGTACTTCGTGCAGGCCATGCCCACCGAGAAGATGCACTGCG
CCGGCCTCAATGTGAGTCCCTCGCCGACCAGCGGCGGTCTAATGCGGATC
CTGCAAGTGAACATCCTGGCCCAGATTGCCGTGTGTAGCGTGGCCTTTTT
AACTAGCGTCGCAAGCTTTCTAGACCAT
BO28966.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:21:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14762-RB | 1497 | CG14762-PB | 1..1494 | 17..1510 | 7470 | 100 | Plus |
| CG14762-RA | 1413 | CG14762-PA | 1..1395 | 17..1411 | 6975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14762-RB | 3801 | CG14762-RB | 836..2330 | 16..1510 | 7475 | 100 | Plus |
| CG14762-RA | 3658 | CG14762-RA | 836..2231 | 16..1411 | 6980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:21:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8012346..8012729 | 399..16 | 1920 | 100 | Minus |
| 2R | 25286936 | 2R | 8010815..8011093 | 1510..1232 | 1395 | 100 | Minus |
| 2R | 25286936 | 2R | 8012060..8012283 | 621..398 | 1120 | 100 | Minus |
| 2R | 25286936 | 2R | 8011401..8011582 | 1092..911 | 910 | 100 | Minus |
| 2R | 25286936 | 2R | 8011643..8011797 | 911..757 | 775 | 100 | Minus |
| 2R | 25286936 | 2R | 8011172..8011311 | 1232..1093 | 700 | 100 | Minus |
| 2R | 25286936 | 2R | 8011865..8012002 | 759..622 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:21:55 has no hits.
BO28966.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:35:15 Download gff for
BO28966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-RB | 836..2329 | 17..1512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:01 Download gff for
BO28966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-RB | 837..2330 | 17..1512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:19 Download gff for
BO28966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-RB | 837..2330 | 17..1512 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:19 Download gff for
BO28966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8010813..8011092 | 1233..1512 | 99 | <- | Minus |
| 2R | 8011172..8011311 | 1093..1232 | 100 | <- | Minus |
| 2R | 8011401..8011581 | 912..1092 | 100 | <- | Minus |
| 2R | 8011643..8011795 | 759..911 | 100 | <- | Minus |
| 2R | 8011866..8012002 | 622..758 | 100 | <- | Minus |
| 2R | 8012060..8012282 | 399..621 | 100 | <- | Minus |
| 2R | 8012347..8012728 | 17..398 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:01 Download gff for
BO28966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3898318..3898597 | 1233..1512 | 99 | <- | Minus |
| arm_2R | 3898677..3898816 | 1093..1232 | 100 | <- | Minus |
| arm_2R | 3898906..3899086 | 912..1092 | 100 | <- | Minus |
| arm_2R | 3899148..3899300 | 759..911 | 100 | <- | Minus |
| arm_2R | 3899371..3899507 | 622..758 | 100 | <- | Minus |
| arm_2R | 3899565..3899787 | 399..621 | 100 | <- | Minus |
| arm_2R | 3899852..3900233 | 17..398 | 100 | | Minus |
BO28966.pep Sequence
Translation from 16 to 1528
> BO28966.pep
MAGIQLQSGCTMVVTVVLLLQVLVMDQVLGQGPPQTQVCPEQSEIAPCIC
TVKKNGLDILCETTDLAHITKSMGTLKGKSPIIFYLKLRHNNLPKLQGFV
FLALDIRHLTIHNSSLAAIEENALSSLGAGLTQLDVSLNQMKTVPSQALQ
HLFHLLILNLNHNKITVIHNNAFEGLETLEILTLYENKITQIDPEAFRGL
EDHIKRLNLGGNDLTNIPQKALSILSTLKKLEIQENKIRTISEGDFEGLQ
SLDSLILAHNMITTVPANVFSHLTLLNSLELEGNKISVIDKDAFKGLEEN
LQYLRLGDNQIHTIPSEALRPLHRLRHLDLRNNNINVLAEDAFTGFGDSL
TFLNLQKNDIKVLPSLLFENLNSLETLNLQNNKLQRIPQDIMEPVIDTLR
IIDITDNPLNCSCELTWFPKLLEDLKNKDDEMSQKKKPLCHMSLDNREYF
VQAMPTEKMHCAGLNVSPSPTSGGLMRILQVNILAQIAVCSVAFLTSVAS
FLDH
BO28966.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:23:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14762-PB | 498 | CG14762-PB | 1..498 | 1..498 | 2537 | 100 | Plus |
| CG14762-PA | 470 | CG14762-PA | 1..470 | 1..470 | 2387 | 99.1 | Plus |
| caps-PB | 540 | CG11282-PB | 74..410 | 106..422 | 388 | 32.1 | Plus |
| caps-PA | 540 | CG11282-PA | 74..410 | 106..422 | 388 | 32.1 | Plus |
| caps-PD | 780 | CG11282-PD | 74..410 | 106..422 | 388 | 32.1 | Plus |
| caps-PB | 540 | CG11282-PB | 172..414 | 86..333 | 179 | 27.9 | Plus |
| caps-PA | 540 | CG11282-PA | 172..414 | 86..333 | 179 | 27.9 | Plus |
