BO28967.complete Sequence
2092 bp assembled on 2011-09-19
GenBank Submission: KX795134
> BO28967.complete
GAAGTTATCAGTCGACATGGTTCAGTTCCTGGGCAAACAGGGCACCGCGG
GTGTTTTTATTTCATTTGGAATGCACAATCCTTTCCCAGAGCTCATTCAC
ATGGTGACCCTGGACAAGACGGGCAAGAAGTCCTTCGGCATCTGCATAGT
GCGCGGCGAGGTGAAGGATTCGCCCAACACCAAGACCACCGGCATCTTCA
TCAAGGGCATTGTGCCCGACAGTCCCGCGCATCTGTGTGGTCGCCTAAAG
GTTGGCGATCGGATCCTCTCGCTCAACGGAAAGGATGTGCGCAACTCCAC
CGAACAGGCGGTCATCGATCTCATCAAGGAGGCGGACTTCAAGATCGAAC
TGGAGATTCAGACCTTCGACAAGAGCGATGAGCAGCAGGCCAAGTCAGAT
CCGCGGAGCAATGGCTACATGCAGGCCAAGAACAAGTTCAACCAGGAGCA
GACCACCAACAACAATGCGTCCGGAGGTCAGGGAATGGGGCAAGGTCAGG
GTCAGGGTCAGGGAATGGCTGGCATGAACCGGCAGCAATCGATGCAGAAG
CGGAATACCACATTCACGGCCTCGATGCGTCAGAAGCATAGTAACTACGC
CGACGAGGATGACGAGGACACCCGGGACATGACCGGTCGCATTCGCACGG
AGGCGGGTTATGAGATCGATCGAGCATCCGCCGGTAATTGCAAACTCAAC
AAGCAGGAAAAGGATCGCGACAAGGAGCAGGAAGATGAATTTGGCTACAC
GATGGCTAAGATCAACAAGCGGTACAACATGATGAAGGATCTGCGCAGGA
TCGAGGTCCAGAGGGACGCCAGCAAGCCACTGGGACTCGCACTCGCTGGC
CACAAGGACCGCCAGAAGATGGCCTGCTTTGTTGCCGGTGTGGATCCCAA
CGGAGCATTGGGTAGCGTGGACATCAAACCGGGCGACGAGATCGTCGAGG
TCAACGGCAATGTGCTGAAGAATCGCTGCCACTTGAACGCTTCCGCCGTG
TTCAAGAACGTGGATGGGGATAAGCTCGTGATGATCACCTCGCGACGCAA
GCCCAACGATGAGGGCATGTGCGTCAAGCCCATCAAGAAGTTCCCCACCG
CGTCTGATGAGACTAAGTTTATCTTCGACCAGTTTCCCAAGGCGCGCACG
GTGCAGGTGCGCAAGGAGGGTTTCCTGGGCATCATGGTCATCTATGGCAA
GCACGCTGAGGTGGGAAGTGGCATTTTCATCTCGGATCTGAGAGAGGGAT
CGAATGCCGAGTTGGCGGGCGTGAAAGTGGGCGACATGCTGCTGGCCGTT
AATCAGGATGTAACACTGGAATCCAACTACGATGATGCTACTGGACTGCT
TAAACGTGCCGAGGGCGTAGTGACCATGATTCTATTGACTCTCAAGAGCG
AGGAGGCGATAAAGGCTGAGAAGGCGGCGGAAGAGAAAAAGAAGGAGGAG
GCCAAGAAAGAGGAGGAAAAGCCACAGGAACCCGCCACAGCCGAGATCAA
GCCGAACAAAAAGATACTCATTGAGTTGAAGGTGGAAAAGAAGCCAATGG
GCGTCATCGTCTGCGGCGGCAAGAACAACCATGTCACGACTGGCTGTGTA
ATCACCCACGTTTATCCGGAGGGACAAGTGGCAGCCGACAAGCGCCTCAA
GATCTTTGACCACATTTGCGATATAAATGGTACGCCAATCCACGTGGGAT
CCATGACGACACTGAAGGTCCATCAGTTATTCCACACCACATACGAGAAA
GCGGTCACCCTAACGGTCTTCCGCGCTGATCCTCCGGAGCTGGAAAAGTT
TAACGTTGACCTTATGAAAAAAGCAGGCAAGGAGCTGGGCCTGTCGCTTT
CTCCCAACGAAATTGGATGTACCATCGCGGACTTGATTCAAGGACAATAC
CCGGAGATAGACAGCAAACTGCAGCGCGGCGATATTATCACCAAATTCAA
TGGCGATGCCTTGGAGGGTCTTCCGTTCCAGGTGTGCTACGCCTTGTTCA
AGGGAGCCAACGGCAAGGTATCGATGGAAGTGACACGACCCAAGCCCACT
CTACGTACGGAGGCACCCAAGGCCGCAAGCTTTCTAGACCAT
BO28967.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:49:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| inaD-RB | 2061 | CG3504-PB | 1..2058 | 17..2074 | 10290 | 100 | Plus |
| inaD-RA | 2025 | CG3504-PA | 37..2022 | 89..2074 | 9930 | 100 | Plus |
| inaD-RA | 2025 | CG3504-PA | 1..37 | 17..53 | 185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:49:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| inaD-RB | 2331 | CG3504-RB | 197..2254 | 17..2074 | 10290 | 100 | Plus |
| inaD-RA | 2295 | CG3504-RA | 233..2218 | 89..2074 | 9930 | 100 | Plus |
| inaD-RA | 2295 | CG3504-RA | 197..233 | 17..53 | 185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:49:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22857601..22858212 | 664..53 | 3060 | 100 | Minus |
| 2R | 25286936 | 2R | 22857038..22857394 | 1111..755 | 1785 | 100 | Minus |
| 2R | 25286936 | 2R | 22856024..22856321 | 1885..1588 | 1490 | 100 | Minus |
| 2R | 25286936 | 2R | 22856748..22856975 | 1337..1110 | 1140 | 100 | Minus |
| 2R | 25286936 | 2R | 22855765..22855954 | 2074..1885 | 950 | 100 | Minus |
| 2R | 25286936 | 2R | 22856381..22856521 | 1588..1448 | 705 | 100 | Minus |
| 2R | 25286936 | 2R | 22856578..22856689 | 1448..1337 | 560 | 100 | Minus |
| 2R | 25286936 | 2R | 22857450..22857548 | 761..663 | 480 | 99 | Minus |
| 2R | 25286936 | 2R | 22858562..22858598 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:49:30 has no hits.
BO28967.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:23 Download gff for
BO28967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| inaD-RB | 197..2254 | 17..2076 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:13 Download gff for
BO28967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| inaD-RB | 197..2254 | 17..2076 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:31 Download gff for
BO28967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| inaD-RB | 197..2254 | 17..2076 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:31 Download gff for
BO28967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22856749..22856973 | 1112..1336 | 100 | <- | Minus |
| 2R | 22857038..22857393 | 756..1111 | 100 | <- | Minus |
| 2R | 22857456..22857546 | 665..755 | 100 | <- | Minus |
| 2R | 22856578..22856689 | 1337..1448 | 100 | <- | Minus |
| 2R | 22855763..22855953 | 1886..2076 | 98 | <- | Minus |
| 2R | 22856024..22856320 | 1589..1885 | 100 | <- | Minus |
| 2R | 22856381..22856520 | 1449..1588 | 100 | <- | Minus |
| 2R | 22857601..22858211 | 54..664 | 100 | <- | Minus |
| 2R | 22858562..22858598 | 17..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:13 Download gff for
BO28967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18743904..18744043 | 1449..1588 | 100 | <- | Minus |
| arm_2R | 18744101..18744212 | 1337..1448 | 100 | <- | Minus |
| arm_2R | 18743286..18743476 | 1886..2076 | 98 | <- | Minus |
| arm_2R | 18743547..18743843 | 1589..1885 | 100 | <- | Minus |
| arm_2R | 18744272..18744496 | 1112..1336 | 100 | <- | Minus |
| arm_2R | 18744561..18744916 | 756..1111 | 100 | <- | Minus |
| arm_2R | 18744979..18745069 | 665..755 | 100 | <- | Minus |
| arm_2R | 18745124..18745734 | 54..664 | 100 | <- | Minus |
| arm_2R | 18746085..18746121 | 17..53 | 100 | | Minus |
BO28967.pep Sequence
Translation from 16 to 2092
> BO28967.pep
MVQFLGKQGTAGVFISFGMHNPFPELIHMVTLDKTGKKSFGICIVRGEVK
DSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVI
DLIKEADFKIELEIQTFDKSDEQQAKSDPRSNGYMQAKNKFNQEQTTNNN
ASGGQGMGQGQGQGQGMAGMNRQQSMQKRNTTFTASMRQKHSNYADEDDE
DTRDMTGRIRTEAGYEIDRASAGNCKLNKQEKDRDKEQEDEFGYTMAKIN
KRYNMMKDLRRIEVQRDASKPLGLALAGHKDRQKMACFVAGVDPNGALGS
VDIKPGDEIVEVNGNVLKNRCHLNASAVFKNVDGDKLVMITSRRKPNDEG
MCVKPIKKFPTASDETKFIFDQFPKARTVQVRKEGFLGIMVIYGKHAEVG
SGIFISDLREGSNAELAGVKVGDMLLAVNQDVTLESNYDDATGLLKRAEG
VVTMILLTLKSEEAIKAEKAAEEKKKEEAKKEEEKPQEPATAEIKPNKKI
LIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHI
CDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLM
KKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALE
GLPFQVCYALFKGANGKVSMEVTRPKPTLRTEAPKAASFLDH
BO28967.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| inaD-PB | 686 | CG3504-PB | 1..686 | 1..686 | 3545 | 100 | Plus |
| inaD-PA | 674 | CG3504-PA | 1..674 | 1..686 | 3453 | 98.3 | Plus |
