BO28970.complete Sequence
3823 bp assembled on 2011-09-19
GenBank Submission: KX797402
> BO28970.complete
GAAGTTATCAGTCGACATGTCATTTACGCTGACGAATCAGAGCTTAATCC
GATTGGAGAGCTCCAAGGACGACGATGAATGGAATCGGACATTAATGTTC
TTCAATGTAGATATTTCGAGCGGAGTGTGCCGTGACCACCAAAACAAGAT
TTCGCAGCCACGGTCCTCCGTTTGCAATGGAAAGCGACGAGCTCCCGGCG
GAGGATTGGCCAATCCAATTACGGAGAGTGTGATGTCATTTGTAGCAGCC
AATAAATTCTATGCTCGCGAACATTCAAATTTTGATCATGGGAATTATAC
GCCACGAACTTCTGGCCGGCGAAGAGATAACTTTGCCTATTCCGACAGAC
GTCGTCATTTTTATCATAGACCAATTAAATCCGGACGAAGTCGTGCCGCA
ATAGGTTTAGTTTCCCCATCTCCATCGGCCGATTCTACGGGTTACTATGA
GAGTAAAAGGATCCACTATCCAGACTTTGAGACTGGGAAGACGTTTGATA
ACTTTTACCCAGATGATGAACCTTATGAATTAGAGGAAGATGAACCCCGT
AGAGTCCTCTCAACCTCTGATTATACAAAACAACAGGAAGATCCAAGAGC
TAACAAAGAATACGCGGATGGCAGATATGACTACTACCCCCATGGTTCAA
GGTCAACAAATAGACACCACAGAGAATCTAAGAGATACAATAGATATCCC
TTCCCTGAGCACCCAGCTCAAGATGATTACCATCGAGACTTCAGACGAGC
TGTTCCGCGTCAGTTACGATCTAGTTCCTATAGGATGAAACACAATTGTA
GGCAGGCCTCAGGATCTTTACCACCCAACTATGCCTCAAATTGTTACCCA
CATGACTCAACGGAATATGGGAGTGACAATGACTATGACGGTTATCCTGA
AAATTACAAAAAATACAGAGATTATTATGAGGAACCGACGGCTGAAGCCT
ATCAAAACCCATATGAAGAATTCCATGACTACGAATATCCAGATTATAAA
CAAAGTAGTAAAGCCCCACCGGTACCATTTCCGAAACCTCAACCTAAGTA
CTACAAAAGTTATTCTAAAGCACCGTCCCCGAACTATCCAACCAATCCAA
TTTTTAGGCCTGAAATGGAATCTAAAGTAAACGAGGTTAAGGTATCCCCT
TATGAAGAAGCCGAAACTCGTCAAGTTAAATCCAATCGAATTAAACAAAA
TAATCATTCAGAGGAAATTCCACGTAGAAAAGGTTTCAACTATGTTAAAA
AGAGGAGAGAAGAACCGATAAAATACGACAAAATTTCAAAACATATTTCT
CGTCTTGCTCCACATGTACAATATGCAAGTAAAGGCCAAAATGATAGATT
TACTATGGAAGTTAATCCTCATAGAGAACGTTCTGTTTCTAGCACCCATA
GAAAAATATTTAGCGAAGAACTTCCTCACAGATATCGCCCGAAAAAAGTT
ATTAATGAAACACGTGAGCCGCATAGAAACTTAAAAACTAAATCTGTTGG
ACAGTACGATAAGTCAAAAGCGCAATATGAGAGTTATAAAACTCGTGGTC
ATCATCATAAATCTTCGCCAGATAGAAAAAAGTCGGTTGACTTTGTTCGC
TTCACAGACCTAAACGATGGTTCAGAAATTCCGCATAAAATTCGTGAGAA
CGGTCAATCCCCATCGTCCATATTTTTCACTATCGAGATACCGTATAAAA
AGAAGCATCGAAGATATACATATCCCCAAACAGGGGAATATATATCCAAA
AGATCACATTCGGGCTGTGATAATTTTTCCCAAAAGTCGTTTAGGCCGCA
AACATCGCTATATGATGTTGGGAAACTACGAAAGCGAAAAACAATGAAGC
AGAAAATATCTGGATTTTTTAAGAGGTCAAAACTATGCTTGTCGAAGTCG
AACATTTTCAGAAGCAAATCTAAAATAATAAAGAAGCCAGCACAGCGAAA
CCTAAACTGTGCTCAAATAAGTAATCCTAGCCCCGATTACTCCGTTAACT
CTCCCATAGCAAGTAATCACTCTTTGGAGTCGGAAAATGTGAAAGTTCCG
TCTCAGGAAAGTGAACACCAAAAATATGGCTTAAAAAGGGGCAAGGAATG
TCATTATCCCACTGTTTACAGGGGAACCAACAAACAGCTGCCCGAAAATA
ATAACGAGATCTTTCACCAGTACTCCATGTTCAACGTTCTGAGCTCCACC
AACCAAAGGTCGAAGGTAAATAACGATGACTATGACCACTTCGATCCGGG
ATTAAGTAAACGAACCAGTCGATATTTCAGACCTGCTGCTGATTCGCCCA
CGAAGAGTTCCTATAAGGAATTCGATCGCGTGTCTAGTGGAAATTGCAGT
CTCTTTAGTGAGGGAAAATGTGGAGATGCCATCGGAAAAAGTGAAATTAA
CGTCTGCCTAACGATTCGGACCACTGATGTAAGTTTGACGGGCAGTCCGA
GGATAGTGTCATCAAAAATCGTTGGGGATCATGGCTTATCCTCCAAAAGC
AATAATGGTGAAGCCAAAATAACTCGTTCAAGGCCAGCAATTCGTTCAGT
ATCGAGACAAAGTAGTGGAAGCACAATATTTGAAAGTGCTAGTGGTGAAA
ACCAATTCAAGAATGTCAGGTTTTCCCCCTCGCACTTTACCCACAATAGT
TGTTCCTCCGCCCAAAGCAGCTCCGAAAGCAATTCTTCAAGAATTCAAAC
CTCCATAAATTCGCAAGAGCATGTCTGCAAAAGGAAAAGCATTGAGGCGA
GTTCCAAGCCACCAGAAATGCCTGGAAGTATTGGTAGCTCTTCGGAATAC
CTTCGTCCTCGACATCGCCTTGTCACCAAATGGAGCTTAACCAGTCAGTC
CAAGCCCTATAATTCTAGGCCAGAACCAAGCCACCGCTGGACCCCTGATA
AATTAGATACAAATTCTCTAAGACCAACTTTGTTTCAAAGCGATGTAACT
AAAAGGTCAAGCCTAAAAAGGGTGGATGACAACCTTGTGAAATCAGTGCC
CAAAAGGGTAGTCTTGAAAACAAAAAGCTCGGAAAGTATGATTAGTGGGT
CAATGTGCAGTTCTGGTAGCAGTGCGAAATCACTTTCCACATTTGAAATT
CAGGACAAGAAGAACGATGACAGAAGTGAGTGCTACAGATCCCAGAGCCA
CCATTTTCAATTTGGCGAAGATAGGAAAATTGAGGTATTCCCAAGGAAAA
CAAGTAGTTGGCCGCGACAAAGTCCACGAAGCTTTCCAGGGCCACCGATC
CGGAACATAGATCCTGAACCTTTTGGCAAATCGACCTTGTCACCCAAAAC
ATCAACTCAAAGCTTAGAGTCCTCCATAAGTAGATGCTCCAGTGATGGCT
TGTCAGGAAATAATGAAGGAAGTACCAGCCACAAGCCAAAGGATATGCAA
CTGGTTTGCTATCCCGATGACGATTCCAATTTAAGGAATTCTCGCCAGTC
CCAGGTTGAATATGGAAGCGGATTCACAACTATGCGAGGTCTAGATATTA
CAGAATCATCGAATCGAGGGGATCTTTGTTGTCCAAAGCTAGTTTCTGAT
TTGGAGAGGGAATCCTTTTGCCCGAAAAGCATTGTGGAGGAGCTGAAACG
AGAGCTATTGCAGACCTTCAGAGCCGAACAGCAAATCAGAAGTCAGTCGC
CTTTTCTTCGACCCACTCCGCACATTATGATATTCCCCTGTGTTCCCAGT
GTCATGTGCCAGACCAGAGCAAACATTAATCCGAGTCCCAATCTATTCCC
TAGACCGGAGTCTGAAATATGCTGGATACCTAACTCCAAGCCACAAAACC
TCGCGGCAAGCTTTCTAGACCAT
BO28970.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:04:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33125-RB | 3792 | CG33125-PB | 1..3789 | 17..3805 | 18945 | 100 | Plus |
| CG33125-RC | 2211 | CG33125-PC | 1..2199 | 17..2215 | 10995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:04:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33125-RB | 3995 | CG33125-RB | 124..3912 | 17..3805 | 18945 | 100 | Plus |
| CG33125-RC | 3930 | CG33125-RC | 124..2322 | 17..2215 | 10995 | 100 | Plus |
| CG33125-RC | 3930 | CG33125-RC | 2321..3847 | 2279..3805 | 7635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:04:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2648443..2652062 | 3805..186 | 18100 | 100 | Minus |
| 2L | 23513712 | 2L | 2652122..2652291 | 186..17 | 850 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:04:05 has no hits.
BO28970.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:19 Download gff for
BO28970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33125-RB | 1..3789 | 17..3807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:26 Download gff for
BO28970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33125-RB | 79..3867 | 17..3807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:01 Download gff for
BO28970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33125-RB | 124..3912 | 17..3807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:01 Download gff for
BO28970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2648440..2652062 | 186..3807 | 99 | <- | Minus |
| 2L | 2652123..2652291 | 17..185 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:26 Download gff for
BO28970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2652123..2652291 | 17..185 | 100 | | Minus |
| arm_2L | 2648440..2652062 | 186..3807 | 99 | <- | Minus |
BO28970.pep Sequence
Translation from 16 to 3823
> BO28970.pep
MSFTLTNQSLIRLESSKDDDEWNRTLMFFNVDISSGVCRDHQNKISQPRS
SVCNGKRRAPGGGLANPITESVMSFVAANKFYAREHSNFDHGNYTPRTSG
RRRDNFAYSDRRRHFYHRPIKSGRSRAAIGLVSPSPSADSTGYYESKRIH
YPDFETGKTFDNFYPDDEPYELEEDEPRRVLSTSDYTKQQEDPRANKEYA
DGRYDYYPHGSRSTNRHHRESKRYNRYPFPEHPAQDDYHRDFRRAVPRQL
RSSSYRMKHNCRQASGSLPPNYASNCYPHDSTEYGSDNDYDGYPENYKKY
RDYYEEPTAEAYQNPYEEFHDYEYPDYKQSSKAPPVPFPKPQPKYYKSYS
KAPSPNYPTNPIFRPEMESKVNEVKVSPYEEAETRQVKSNRIKQNNHSEE
IPRRKGFNYVKKRREEPIKYDKISKHISRLAPHVQYASKGQNDRFTMEVN
PHRERSVSSTHRKIFSEELPHRYRPKKVINETREPHRNLKTKSVGQYDKS
KAQYESYKTRGHHHKSSPDRKKSVDFVRFTDLNDGSEIPHKIRENGQSPS
SIFFTIEIPYKKKHRRYTYPQTGEYISKRSHSGCDNFSQKSFRPQTSLYD
VGKLRKRKTMKQKISGFFKRSKLCLSKSNIFRSKSKIIKKPAQRNLNCAQ
ISNPSPDYSVNSPIASNHSLESENVKVPSQESEHQKYGLKRGKECHYPTV
YRGTNKQLPENNNEIFHQYSMFNVLSSTNQRSKVNNDDYDHFDPGLSKRT
SRYFRPAADSPTKSSYKEFDRVSSGNCSLFSEGKCGDAIGKSEINVCLTI
RTTDVSLTGSPRIVSSKIVGDHGLSSKSNNGEAKITRSRPAIRSVSRQSS
GSTIFESASGENQFKNVRFSPSHFTHNSCSSAQSSSESNSSRIQTSINSQ
EHVCKRKSIEASSKPPEMPGSIGSSSEYLRPRHRLVTKWSLTSQSKPYNS
RPEPSHRWTPDKLDTNSLRPTLFQSDVTKRSSLKRVDDNLVKSVPKRVVL
KTKSSESMISGSMCSSGSSAKSLSTFEIQDKKNDDRSECYRSQSHHFQFG
EDRKIEVFPRKTSSWPRQSPRSFPGPPIRNIDPEPFGKSTLSPKTSTQSL
ESSISRCSSDGLSGNNEGSTSHKPKDMQLVCYPDDDSNLRNSRQSQVEYG
SGFTTMRGLDITESSNRGDLCCPKLVSDLERESFCPKSIVEELKRELLQT
FRAEQQIRSQSPFLRPTPHIMIFPCVPSVMCQTRANINPSPNLFPRPESE
ICWIPNSKPQNLAASFLDH
BO28970.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33125-PB | 1263 | CG33125-PB | 1..1263 | 1..1263 | 6742 | 100 | Plus |
| CG33125-PC | 736 | CG33125-PC | 1..733 | 1..733 | 3971 | 100 | Plus |
