BO28971.complete Sequence
2251 bp assembled on 2011-09-20
GenBank Submission: KX796833
> BO28971.complete
GAAGTTATCAGTCGACATGCGGAAAAGTATTGTTTTCATCGGTTTAATAG
CGCTTTTCCAGAGTTGCTTGGCTGAAACGCCGGAAACGTATCTCCTCAAA
ACACACAGTCTTCCCTCGGACCTGAATTTTATGCCCACCCTGGGCAATGG
CCACGTGGGATACACGATCTTCGGAGATGCGATCTTTATGAATGGAGTCT
ACAACGGAGCCGGCGGAAACAGCAAGCGTGCTCGCATTCCCAACTGGATA
AATATCAGCACGGAAGCTTGTGATCGGTTCGGTTGTGCCACTGACAGCGA
TGTGGTAAATGGAACCAGCTACGAGATGAATCTACGAGATGGCTACTTCC
GGGTTGTCACAACATACAGAGGACTAGGGATTTCAGTGGAACAGAGAACC
TATCCGCACAAGTACTACAATCGTGCTTTAGTCTATGAAGTGGTGGCTAA
TAGACTTGCTGGCCGAAACTCAAGGATTAACTCTCCAAAGTTCCTAAGGC
TAACACAATTCGCTGGTAACTTCAGTGATGCCTTCGACTTTGTGGTGGTC
AACAATGGCAGCTCAGCCAGCGGCAATTACCGCACACTTCGCGGACAAAC
AAAGGTGGTTGAGAACGAGCAGTTCCAACCAGATCCTCAGGAGATCTTTG
TCCTCTTCAGTGAATCCTTGGAGCAACCCCTTGAACTGCAGTGGCCCACG
TGGCAGGATCAATTAAGCCATCGAGTTATCATTGCCATAGACAGAGACGA
AAGTGTGACACGAAAGGAACTGCAGGATGTGCTTCAGTTGAGCTCCGATA
ATCTTCTCCAGAAGCACTCGCAATCGTGGAACAGTTTTTGGGACGATGAG
TTCTCCATTGAAATCAAGGGTGATGCTCTGGAACTGTCGCAGATTGTAAA
TGCTGGCATATTCTATATAGTAAGTTCCCTTCCGTCACTGGAAACCAATC
AGAAAAACGAACTATTCTATGGATTAAGTCCTACTGGCTTGGGGCGTGGC
AATCTGGAGGCGGATTACCAGGGGCACAACTTCTGGGACACGGAGATCTG
GATGCTGCCGATAGTTTCGCTATTCGGCTTGGATTATGCAAAAGAGGTGC
TGGGCTATCGCAGCAGAAAACTGGAGGCAGCCAAATATCATGCAAATGCC
ACTGGTTATAAGGGAGCTAGATTTCCCTGGGAGAGTGCGTACACTGGCAC
AGAGGTCACAAATCCCTGTTGTCCCGAGGTGGCGGAACAGGAGATACATA
TATCCCCCGATATATCCTTTGCCCTACAAAAATTTTTCGCCCAATCAAAC
GATAGCGAATGGACCTGTGGCACTGCATGGCCCATAACCGCCGATGTGGC
CGATTTCCTCGTTAGCCGAGCCACCTGTGATGATTCCACCAAAACATGCC
ACTTGCTAAACGTCATGGGACCCGATGAAGATCATCCGAATGTTAACGAT
AATGTGTACACCAATGCTGTGTCCAAAATTGCACTAAACTTTGCCGAATG
GTTGGCCAAACATTGTGGTAATGCCAGCACCGAACGTTTGGAGAAATGGC
GCGAGGTCAGCGATGGTTTGGTGATTCTACGCGATGAGAGCCTAAACTAT
CATCCCGAGTATGCGGGCTATGTCCGCGACACCATTATCAAGCAGGCAGA
CACCATTCTACTTGGATACCCCTTGAATTTCGATAAAAGCTCCACACACA
TTAATGATCTACGGTTTTACGCAAATGTAACCCGTGAATCTGGTCCAGCA
ATGACGTGGTCCATGTTCGCAGCCAACTATCTACGAAACCTTCAGCTAAC
TCTGGCAAATGAGTATTTCGAACGTGGCTACAAGAGCTACGTACGGCCGG
AGTTTAAAGTATGGAGTGAAACGCCCATTGGTTACGATGGCTCGGCGAAC
TTCCTAACCGGCATTGGTGGTTTCCTTCAAGCTCTGATCTTCGGTTACGG
TGGCTTGGATTTCGGGCGTACTGATGACGATCAATTTTTGATGTTTTTCG
GTATATCTTTGACGCCGCCAAATGTTGAAGAAGTCTTTATCAACTCTATT
CCATACGGGCAGCATGCTAAATGTACACTTCGATTTAAAAGCAGACACTC
TGAAATTTCGTGTTACGACAGGATTGGTAAGGGCTTTAAGATGGCCCAAG
GCCAGAAGCGAACCATCCTTGGCAGATCCTTTAACTTGACCCGCCAAAAT
GAAGATCCTCCCATTGAGATTAGCTTTTTAAGAGCAAGCTTTCTAGACCA
T
BO28971.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:24:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16965-RC | 2220 | CG16965-PC | 1..2217 | 17..2233 | 11085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:24:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16965-RC | 2300 | CG16965-RC | 42..2258 | 17..2233 | 11085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:24:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11982414..11983101 | 483..1170 | 3440 | 100 | Plus |
| 2L | 23513712 | 2L | 11983154..11983675 | 1168..1689 | 2610 | 100 | Plus |
| 2L | 23513712 | 2L | 11983733..11984233 | 1686..2186 | 2505 | 100 | Plus |
| 2L | 23513712 | 2L | 11981977..11982354 | 105..482 | 1890 | 100 | Plus |
| 2L | 23513712 | 2L | 11981632..11981723 | 17..108 | 460 | 100 | Plus |
| 2L | 23513712 | 2L | 11984292..11984338 | 2187..2233 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:24:03 has no hits.
BO28971.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:55:44 Download gff for
BO28971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16965-RB | 17..2233 | 17..2235 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:30 Download gff for
BO28971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16965-RC | 42..2258 | 17..2235 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:37 Download gff for
BO28971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16965-RC | 42..2258 | 17..2235 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:37 Download gff for
BO28971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11984292..11984338 | 2187..2235 | 95 | | Plus |
| 2L | 11981632..11981723 | 17..108 | 100 | -> | Plus |
| 2L | 11981981..11982354 | 109..482 | 100 | -> | Plus |
| 2L | 11982414..11983101 | 483..1170 | 100 | -> | Plus |
| 2L | 11983157..11983675 | 1171..1689 | 100 | -> | Plus |
| 2L | 11983737..11984233 | 1690..2186 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:30 Download gff for
BO28971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11981632..11981723 | 17..108 | 100 | -> | Plus |
| arm_2L | 11981981..11982354 | 109..482 | 100 | -> | Plus |
| arm_2L | 11982414..11983101 | 483..1170 | 100 | -> | Plus |
| arm_2L | 11983157..11983675 | 1171..1689 | 100 | -> | Plus |
| arm_2L | 11983737..11984233 | 1690..2186 | 100 | -> | Plus |
| arm_2L | 11984292..11984338 | 2187..2235 | 95 | | Plus |
BO28971.pep Sequence
Translation from 16 to 2251
> BO28971.pep
MRKSIVFIGLIALFQSCLAETPETYLLKTHSLPSDLNFMPTLGNGHVGYT
IFGDAIFMNGVYNGAGGNSKRARIPNWINISTEACDRFGCATDSDVVNGT
SYEMNLRDGYFRVVTTYRGLGISVEQRTYPHKYYNRALVYEVVANRLAGR
NSRINSPKFLRLTQFAGNFSDAFDFVVVNNGSSASGNYRTLRGQTKVVEN
EQFQPDPQEIFVLFSESLEQPLELQWPTWQDQLSHRVIIAIDRDESVTRK
ELQDVLQLSSDNLLQKHSQSWNSFWDDEFSIEIKGDALELSQIVNAGIFY
IVSSLPSLETNQKNELFYGLSPTGLGRGNLEADYQGHNFWDTEIWMLPIV
SLFGLDYAKEVLGYRSRKLEAAKYHANATGYKGARFPWESAYTGTEVTNP
CCPEVAEQEIHISPDISFALQKFFAQSNDSEWTCGTAWPITADVADFLVS
RATCDDSTKTCHLLNVMGPDEDHPNVNDNVYTNAVSKIALNFAEWLAKHC
GNASTERLEKWREVSDGLVILRDESLNYHPEYAGYVRDTIIKQADTILLG
YPLNFDKSSTHINDLRFYANVTRESGPAMTWSMFAANYLRNLQLTLANEY
FERGYKSYVRPEFKVWSETPIGYDGSANFLTGIGGFLQALIFGYGGLDFG
RTDDDQFLMFFGISLTPPNVEEVFINSIPYGQHAKCTLRFKSRHSEISCY
DRIGKGFKMAQGQKRTILGRSFNLTRQNEDPPIEISFLRASFLDH
BO28971.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:12:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16965-PC | 739 | CG16965-PC | 1..739 | 1..739 | 3929 | 100 | Plus |
