BO28972.complete Sequence
2215 bp assembled on 2011-09-19
GenBank Submission: KX795199
> BO28972.complete
GAAGTTATCAGTCGACATGGCATCCCTCCATCAGAAGCGTCCCAGCATAA
GTAACTGGTTCTCCTCGCTTCGTCGGCAGCCCAAAAACAAGAAGTGCTCC
CCCGGCTTGGGAGGAAGTGAAAGTGTTGGCAGAAAGCAGCCATTGCAGAG
GAGCTGCCTTGACCTATCCACGACGCGAGTTGGTTGCGATGGTTGTGTAA
GTTTGGAGTTCTTTCAATCGGAATCCCCTGAAAGTCGGCGAAGCAACAGC
ACTTTCTATGTCAACACCCAAAATGTATCGTCTGCTGTTTTTAAAGACAA
TCGTCAGCCTCTATTGGAAAGGGGCAGCGGTAGTGATAGTAGCCCTAGCA
GCGTTTGCGTTCGATGCTCATGCAATTCGATAACGAAAAGCGGGGACAGA
AATGAAACACCTACAATGGCCACGCCTAAGTCGGACATTAAGATCGCGCT
GAAACCTCCACCCAAGCCCCGCTCCCCTTCCATGGCTCCCTACACTAGTG
TGGCTACATATAACATCACGAAATTAGCGCCGGACAGCCCACCCCCCGCC
AGCCCCACATTAAGCACTCAAACCGTAAATTGCAGCGATGTAACCACGAA
GGTCACAGAGGTACAGCGCCTACCCTGCGATGAACCCAACACTGAACTCA
TAAGCAAGCGAACGGAGTACAAGCACACAACCATCACAACAACGACAAGA
ACATTAATTGTGTCGCGACCCGTGGAACTGCTTTTAAATGAAAATGGCGA
AATAATCGCAAGGCGATCCCCCCGCAAATCGCGCTCTAATTCCCTGGGCC
GCATGCTTGACGTGCAGAATGAAATTGGAACTGGCGGGTTGTTTATGGAA
GCGGATCCTTGTTCGAAAAACAGTTTACCGCCTCCACCCTATATCGACGA
TATGCGCTTCATTGATGACAGCTCCAACTCACAAAGTGAGTCCGAGCGGA
ACTCTAACATACACAAAACCAACAAATATACTTCAAAGAATAATAACAAC
GACAGCAAGCGGGAGAGCCAGCAATCGAATCTGTGCGAGAGTTGCCGCAT
GCTTCTCGATCGAAATTACATAAATACTGAACAGAGTGACAATCTAGTCA
TCCTCAGGCGACCATCAAAGCAAATTAAAGATGAGTTGTGCGAGGTTGTA
TCGGAAATGGAGGCGCTGGATGTGCCCGAAGACTGCAAGCATTCCAATAA
AGATAAACAGATGTCCATTGGCCGTAAAAAGTTTAACATGGACCCAAAAA
AAGGCATTGAGTATCTCGTTGAAAACAGGCTGCTACGTCATGATCCCCAG
GACGTTGCCCACTTTCTCTATAAGGGAGAGGGACTAAATAAAACAGCCAT
TGGCGATTACCTCGGCGAGAAAAACGATTTTAATGAGGATGTGCTTAAGG
CTTTTGTGGCGCTTCACGATTTCACCAATCTCATTCTCGTACAAGCCCTC
AGACAATTTCTGTGGTCGTTTCGCCTGCCCGGCGAGGCACAAAAGATCGA
TCGCATGATGGAGACCTTCGCACAGCGCTACTGTCAACTAAATCCAGATA
TATTCACCAACACGGACACATGCTATGTGCTCAGCTTCGCAATTATAATG
CTAAATACCTCACTACACAATCCATCTGTTAAAGACAAACCCACCGTTGA
TCAATTCATATCGATGAATCGTGGCATCAACAACGGCGGAGATTTGCCCC
GTGGCCTGCTGGAATCCCTTTACGAGTCAATTCGAACAGAGCCATTTAAA
ATACCACAGGATGATGGAAATGATTTGATGCACACCTTCTTCAATCCCGA
CAAGGAGGGCTGGCTGTGGAAGCAAGGCGGCAGATACAAATCGTGGAAAC
GACGTTGGTTCATTTTGAACGATAATTGCTTATACTATTTTGAATACACA
ACGGATAAGGAACCACGCGGAATTATACCGCTGGAGAATATATCGGTGCG
CGAGATTCACGATCGCAGCAAACCGCATTGCTTTGAGTTGTTTGCGACGG
GCGGTGCTGATATAATCAAGGCATGCAAGACTGACTCTGAGGGCAAAGTG
GTAGAGGGCAAGCATACGGTGTACCGCATGTCCGCTGCCACGGAGGAAGA
TCAGCAGGAGTGGATCAAGCGTTTGACGCAGTCCATAAGCCATAATCCGT
TTTATGACATCCTGGTACAAAGAAAGAAAAAGGCACTCAGCAAGAGTGCA
AGCTTTCTAGACCAT
BO28972.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:06:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| step-RE | 2184 | CG11628-PE | 1..2181 | 17..2197 | 10905 | 100 | Plus |
| step-RD | 2184 | CG11628-PD | 1..2181 | 17..2197 | 10905 | 100 | Plus |
| step-RC | 2184 | CG11628-PC | 1..2181 | 17..2197 | 10905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:06:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| step-RE | 4776 | CG11628-RE | 1051..3231 | 17..2197 | 10905 | 100 | Plus |
| step-RD | 3095 | CG11628-RD | 583..2763 | 17..2197 | 10905 | 100 | Plus |
| step-RC | 2834 | CG11628-RC | 322..2502 | 17..2197 | 10905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:06:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21746152..21747255 | 1120..17 | 5520 | 100 | Minus |
| 2L | 23513712 | 2L | 21741793..21742010 | 2049..1832 | 1090 | 100 | Minus |
| 2L | 23513712 | 2L | 21742075..21742280 | 1833..1628 | 1030 | 100 | Minus |
| 2L | 23513712 | 2L | 21742522..21742701 | 1629..1450 | 900 | 100 | Minus |
| 2L | 23513712 | 2L | 21741586..21741735 | 2197..2048 | 750 | 100 | Minus |
| 2L | 23513712 | 2L | 21743838..21743973 | 1254..1119 | 680 | 100 | Minus |
| 2L | 23513712 | 2L | 21742972..21743073 | 1353..1252 | 510 | 100 | Minus |
| 2L | 23513712 | 2L | 21742776..21742876 | 1452..1352 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:06:35 has no hits.
BO28972.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:20 Download gff for
BO28972.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| step-RD | 581..2761 | 17..2199 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:47 Download gff for
BO28972.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| step-RC | 322..2502 | 17..2199 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:57 Download gff for
BO28972.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| step-RC | 322..2502 | 17..2199 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:57 Download gff for
BO28972.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21742973..21743071 | 1254..1352 | 100 | <- | Minus |
| 2L | 21743839..21743971 | 1121..1253 | 100 | <- | Minus |
| 2L | 21741584..21741735 | 2048..2199 | 98 | <- | Minus |
| 2L | 21741795..21742008 | 1834..2047 | 100 | <- | Minus |
| 2L | 21742075..21742280 | 1628..1833 | 100 | <- | Minus |
| 2L | 21742524..21742698 | 1453..1627 | 100 | <- | Minus |
| 2L | 21742776..21742875 | 1353..1452 | 100 | <- | Minus |
| 2L | 21746152..21747255 | 17..1120 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:47 Download gff for
BO28972.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21742524..21742698 | 1453..1627 | 100 | <- | Minus |
| arm_2L | 21742776..21742875 | 1353..1452 | 100 | <- | Minus |
| arm_2L | 21742973..21743071 | 1254..1352 | 100 | <- | Minus |
| arm_2L | 21743839..21743971 | 1121..1253 | 100 | <- | Minus |
| arm_2L | 21741584..21741735 | 2048..2199 | 98 | <- | Minus |
| arm_2L | 21741795..21742008 | 1834..2047 | 100 | <- | Minus |
| arm_2L | 21742075..21742280 | 1628..1833 | 100 | <- | Minus |
| arm_2L | 21746152..21747255 | 17..1120 | 100 | | Minus |
BO28972.pep Sequence
Translation from 16 to 2215
> BO28972.pep
MASLHQKRPSISNWFSSLRRQPKNKKCSPGLGGSESVGRKQPLQRSCLDL
STTRVGCDGCVSLEFFQSESPESRRSNSTFYVNTQNVSSAVFKDNRQPLL
ERGSGSDSSPSSVCVRCSCNSITKSGDRNETPTMATPKSDIKIALKPPPK
PRSPSMAPYTSVATYNITKLAPDSPPPASPTLSTQTVNCSDVTTKVTEVQ
RLPCDEPNTELISKRTEYKHTTITTTTRTLIVSRPVELLLNENGEIIARR
SPRKSRSNSLGRMLDVQNEIGTGGLFMEADPCSKNSLPPPPYIDDMRFID
DSSNSQSESERNSNIHKTNKYTSKNNNNDSKRESQQSNLCESCRMLLDRN
YINTEQSDNLVILRRPSKQIKDELCEVVSEMEALDVPEDCKHSNKDKQMS
IGRKKFNMDPKKGIEYLVENRLLRHDPQDVAHFLYKGEGLNKTAIGDYLG
EKNDFNEDVLKAFVALHDFTNLILVQALRQFLWSFRLPGEAQKIDRMMET
FAQRYCQLNPDIFTNTDTCYVLSFAIIMLNTSLHNPSVKDKPTVDQFISM
NRGINNGGDLPRGLLESLYESIRTEPFKIPQDDGNDLMHTFFNPDKEGWL
WKQGGRYKSWKRRWFILNDNCLYYFEYTTDKEPRGIIPLENISVREIHDR
SKPHCFELFATGGADIIKACKTDSEGKVVEGKHTVYRMSAATEEDQQEWI
KRLTQSISHNPFYDILVQRKKKALSKSASFLDH
BO28972.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| step-PE | 727 | CG11628-PE | 1..727 | 1..727 | 3843 | 100 | Plus |
| step-PD | 727 | CG11628-PD | 1..727 | 1..727 | 3843 | 100 | Plus |
| step-PC | 727 | CG11628-PC | 1..727 | 1..727 | 3843 | 100 | Plus |
| step-PA | 410 | CG11628-PA | 28..410 | 352..727 | 1932 | 95.3 | Plus |
| Sec71-PA | 1653 | CG7578-PA | 571..774 | 385..584 | 448 | 45.6 | Plus |
