BO28973.complete Sequence
844 bp assembled on 2011-08-24
GenBank Submission: KX797213
> BO28973.complete
GAAGTTATCAGTCGACATGGGAAAATTCGAATACTCACTGGGTCTCAATG
AGCTCAAATCCAAGGAGCTGCGATTGTGGCAGGCCTTGATTGGAGAATTC
CTTGGCAATTTGATCCTCAATTTCTTTGCCTGCGGCGCATGCACCCAAAT
TGAGGATGGCACCTTCAAGGCCTTGGCTTTTGGCCTGGCTATCTTCATGG
CCATCACGATTGTGGGCCACTTGAGTGGTGGTCATGTGAATCCTGCCGTT
ACCGCTGGAATGTTGGTCGCAGGACGAATTAGCTTGATCAGAGCCTTTTT
CTATGTGGTTTTCCAGTGCTTGGGTGCAATTGCCGGAACTGCAGCGGTTA
AGATTCTCATCGATCAGGACTATTACAATGGCCTGGGTCACACCTCTCTG
GCGCCCAATATCACCGAGCTGCAGGGCCTGGGAATCGAGTTCTTCCTGGG
ACTCCTGCTGGTGCTCGTCGTCTTTGGGGCCTGTGATCCCCACAAGCCCG
ATTCCCGCTACACGGCGCCCTTGGCCATCGGAATGGCGGTGACCCTGGGT
CACTTGGGCACCATCCGCTACACCGGGGCCAGCATGAATCCCGCTCGCAC
CGTGGGCACCGCCTTTGCCACCGACATCTGGGCGTCGCATTGGGTATACT
GGGTGGGACCTGTGCTGGGGGGCGTGGCTGCCGCCCTGCTCTACACCCAG
GTCCTGGAGGCGAAGCCCGTGCCAAAGGTTAACGAGGCATCCGAGAAGTA
CCGAACGCACGCCGATGAACGCGAGGGATGCAAACCGAACCACAACCCGA
ACCATTTGGCATATACATATCTCGCTGCAAGCTTTCTAGACCAT
BO28973.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:23:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7777-RC | 813 | CG7777-PC | 1..810 | 17..826 | 4050 | 100 | Plus |
| CG7777-RB | 807 | CG7777-PB | 1..760 | 17..776 | 3800 | 100 | Plus |
| CG7777-RD | 780 | CG7777-PD | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:23:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7777-RC | 1479 | CG7777-RC | 216..1025 | 17..826 | 4050 | 100 | Plus |
| CG7777-RB | 1386 | CG7777-RB | 216..975 | 17..776 | 3800 | 100 | Plus |
| CG7777-RD | 1388 | CG7777-RD | 216..974 | 17..775 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:23:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11441066..11441491 | 351..776 | 2130 | 100 | Plus |
| 2R | 25286936 | 2R | 11439968..11440125 | 51..208 | 790 | 100 | Plus |
| 2R | 25286936 | 2R | 11440186..11440330 | 208..352 | 725 | 100 | Plus |
| 2R | 25286936 | 2R | 11441648..11441700 | 774..826 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:23:13 has no hits.
BO28973.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:35:18 Download gff for
BO28973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7777-RC | 213..1022 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:41 Download gff for
BO28973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7777-RC | 216..1025 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:50 Download gff for
BO28973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7777-RC | 216..1025 | 17..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:50 Download gff for
BO28973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11440187..11440330 | 209..352 | 100 | -> | Plus |
| 2R | 11441068..11441490 | 353..775 | 100 | -> | Plus |
| 2R | 11441650..11441700 | 776..828 | 96 | | Plus |
| 2R | 11439833..11439868 | 17..52 | 100 | -> | Plus |
| 2R | 11439970..11440125 | 53..208 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:41 Download gff for
BO28973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7327692..7327835 | 209..352 | 100 | -> | Plus |
| arm_2R | 7327475..7327630 | 53..208 | 100 | -> | Plus |
| arm_2R | 7327338..7327373 | 17..52 | 100 | -> | Plus |
| arm_2R | 7328573..7328995 | 353..775 | 100 | -> | Plus |
| arm_2R | 7329155..7329205 | 776..828 | 96 | | Plus |
BO28973.pep Sequence
Translation from 16 to 844
> BO28973.pep
MGKFEYSLGLNELKSKELRLWQALIGEFLGNLILNFFACGACTQIEDGTF
KALAFGLAIFMAITIVGHLSGGHVNPAVTAGMLVAGRISLIRAFFYVVFQ
CLGAIAGTAAVKILIDQDYYNGLGHTSLAPNITELQGLGIEFFLGLLLVL
VVFGACDPHKPDSRYTAPLAIGMAVTLGHLGTIRYTGASMNPARTVGTAF
ATDIWASHWVYWVGPVLGGVAAALLYTQVLEAKPVPKVNEASEKYRTHAD
EREGCKPNHNPNHLAYTYLAASFLDH
BO28973.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:23:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7777-PC | 270 | CG7777-PC | 1..270 | 1..270 | 1415 | 100 | Plus |
| CG7777-PD | 259 | CG7777-PD | 1..253 | 1..253 | 1312 | 100 | Plus |
| CG7777-PA | 264 | CG7777-PA | 1..253 | 1..253 | 1312 | 100 | Plus |
| CG7777-PB | 268 | CG7777-PB | 1..253 | 1..253 | 1312 | 100 | Plus |
| Drip-PE | 239 | CG9023-PE | 1..228 | 1..233 | 473 | 40.4 | Plus |
