BO28975.complete Sequence
1426 bp assembled on 2011-08-24
GenBank Submission: KX798265
> BO28975.complete
GAAGTTATCAGTCGACATGAATAACCTGAACGCGAATGCCAGTGCCTTTT
TGTGGCAGGTACCGCCGCCGCAGCAGTTGACCCCTCAATCGGTGCAGCAG
CAGACGGTGCAGTCGGTGCAGTCCATGCAGTCCGTGCAGCATAGCCAGCT
GCTTCAATCCGCTGTAGTCTCGCAGCCGCGCAAGTTTGGTGGCAACAAGA
GCAACTATAACTACATGCAGAATCATGCCATTATGGGTCCGGGCGGCGGT
CCAATGGGTGGGATCGGTGGCAACCCTAACATCTACCGAAAGCGCCATTC
TATCAACACCTACAATGCTGGCTTATATCAAACCAATGTAGCAACACTGT
CGACACCACAACAACATGTTTCCCATCAACACCACCACCACCTCCGCCAA
CAACAACAACAACAACATCAACAACAAGCACCACAACAACAACCACATCC
ACAACACCTTCACCACCAACAACAACTAGTTGCCCCAGCTCAATCGCACA
ATCTTTATCAATTTAAAGAACCACCGCTATTGGGACCCGGAGCCGCTTTC
CCACCATTCGGAGCTCCCGAATATCACACCACCACACCGGAGAACTGGAA
GGGGGCCGCCATCCATCCCACTGGCCTGATGAAGGAGCCCGCTGGTGTTG
TGCCCGGACGCAATGCTCCGGTGGCCTTCACACCGCAAGGACAGGCTCAG
GGCGCCGTCATGATGGTCTACGGCCTGGACCACGACACTTCCAACACGGA
TAAGCTCTTCAATTTGGTTTGCCTGTACGGCAACGTGGCACGGATCAAGT
TCTTGAAGACCAAAGAGGGCACCGCCATGGTGCAAATGGGAGACGCTGTG
GCCGTTGAGCGTTGCGTGCAGCACTTGAACAACATTCCCGTGGGCACTGG
TGGCAAGATACAGATCGCTTTCTCCAAACAGAACTTCCTATCCGAGGTGA
TCAACCCGTTCTTGCTGCCCGATCATTCGCCCAGCTTCAAGGAGTACACC
GGCTCCAAGAACAATCGTTTCCTATCGCCGGCCCAGGCGAGCAAGAATCG
CATTCAACCACCGAGCAAGATTTTGCACTTTTTCAACACACCGCCCGGCT
TGACCGAGGACCAACTGATTGGAATCTTTAACATCAAGGATGTGCCCGCC
ACATCGGTGCGCCTGTTCCCCTTGAAGACCGAGCGCTCGTCGTCGGGACT
GATCGAATTTTCCAATATCTCGCAGGCAGTGCTGGCTATCATGAAGTGCA
ACCATCTGCCTATTGAGGGTAAAGGCACCAAGTTCCCATTCATCATGAAG
CTGTGCTTTTCCTCATCCAAGAGCATGAACGGCGCCTGGAACAATGCGGC
CAGCGAGGGCATGATCGAGAAGGAGAACGAGGTGGATACCAAGGTGGACA
TCTACAATGCAAGCTTTCTAGACCAT
BO28975.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:24:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sm-RJ | 1395 | CG9218-PJ | 1..1392 | 17..1408 | 6960 | 100 | Plus |
| sm-RT | 1659 | CG9218-PT | 586..1656 | 338..1408 | 5355 | 100 | Plus |
| sm-RK | 1608 | CG9218-PK | 535..1605 | 338..1408 | 5355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:24:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sm-RJ | 2379 | CG9218-RJ | 301..1693 | 16..1408 | 6965 | 100 | Plus |
| sm-RT | 3226 | CG9218-RT | 1498..2568 | 338..1408 | 5355 | 100 | Plus |
| sm-RK | 3175 | CG9218-RK | 1447..2517 | 338..1408 | 5355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:24:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19538029..19538392 | 701..338 | 1820 | 100 | Minus |
| 2R | 25286936 | 2R | 19546449..19546771 | 338..16 | 1615 | 100 | Minus |
| 2R | 25286936 | 2R | 19532436..19532712 | 1069..793 | 1385 | 100 | Minus |
| 2R | 25286936 | 2R | 19532169..19532376 | 1275..1068 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 19530567..19530702 | 1408..1273 | 680 | 100 | Minus |
| 2R | 25286936 | 2R | 19537776..19537872 | 793..697 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:24:24 has no hits.
BO28975.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:35:20 Download gff for
BO28975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RJ | 285..1676 | 17..1410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:11 Download gff for
BO28975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RJ | 302..1693 | 17..1410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:20 Download gff for
BO28975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RJ | 302..1693 | 17..1410 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:20 Download gff for
BO28975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19532436..19532711 | 794..1069 | 100 | <- | Minus |
| 2R | 19537776..19537868 | 701..793 | 100 | <- | Minus |
| 2R | 19530564..19530700 | 1275..1410 | 98 | <- | Minus |
| 2R | 19532170..19532374 | 1070..1274 | 100 | <- | Minus |
| 2R | 19538030..19538391 | 339..700 | 100 | <- | Minus |
| 2R | 19546449..19546770 | 17..338 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:11 Download gff for
BO28975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15418069..15418205 | 1275..1410 | 98 | <- | Minus |
| arm_2R | 15433954..15434275 | 17..338 | 100 | | Minus |
| arm_2R | 15419675..15419879 | 1070..1274 | 100 | <- | Minus |
| arm_2R | 15419941..15420216 | 794..1069 | 100 | <- | Minus |
| arm_2R | 15425281..15425373 | 701..793 | 100 | <- | Minus |
| arm_2R | 15425535..15425896 | 339..700 | 100 | <- | Minus |
BO28975.pep Sequence
Translation from 16 to 1426
> BO28975.pep
MNNLNANASAFLWQVPPPQQLTPQSVQQQTVQSVQSMQSVQHSQLLQSAV
VSQPRKFGGNKSNYNYMQNHAIMGPGGGPMGGIGGNPNIYRKRHSINTYN
AGLYQTNVATLSTPQQHVSHQHHHHLRQQQQQQHQQQAPQQQPHPQHLHH
QQQLVAPAQSHNLYQFKEPPLLGPGAAFPPFGAPEYHTTTPENWKGAAIH
PTGLMKEPAGVVPGRNAPVAFTPQGQAQGAVMMVYGLDHDTSNTDKLFNL
VCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCVQHLNNIPVGTGGKIQI
AFSKQNFLSEVINPFLLPDHSPSFKEYTGSKNNRFLSPAQASKNRIQPPS
KILHFFNTPPGLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFSN
ISQAVLAIMKCNHLPIEGKGTKFPFIMKLCFSSSKSMNGAWNNAASEGMI
EKENEVDTKVDIYNASFLDH
BO28975.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:23:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sm-PJ | 464 | CG9218-PJ | 1..464 | 1..464 | 2469 | 100 | Plus |
| sm-PI | 420 | CG9218-PI | 1..420 | 1..464 | 2075 | 87.5 | Plus |
| sm-PK | 535 | CG9218-PK | 177..535 | 106..464 | 1901 | 99.4 | Plus |
| sm-PT | 552 | CG9218-PT | 196..552 | 108..464 | 1900 | 100 | Plus |
| sm-PV | 540 | CG9218-PV | 184..540 | 108..464 | 1899 | 99.7 | Plus |
