Clone BO28979 Report

Search the DGRC for BO28979

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:289
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG32720-RB
Protein status:BO28979.pep: Imported from assembly
Sequenced Size:1042

Clone Sequence Records

BO28979.complete Sequence

1042 bp assembled on 2011-08-24

GenBank Submission: KX798737

> BO28979.complete
GAAGTTATCAGTCGACATGGGTCGCAGTAAGGTGTTAAGAAAGAAGCAAT
CTAGCAAGAAGCGACGACATACAATTGATCAAGAAAATACAGACGATTAT
TATATGACACCCGAAGAAGTACGGCAATCGGTTGAGCGGTGGTCATTCCT
TTGGCACTGTAGTGATTCTGATTCTGATTCTAATTCCGAATCGGAGAGCA
GTTCAACGTCATCATTGTTGCAACATGATCCATCTCTGTATGGAGACTGG
CGTGTGCGGGGTGAAGAATTCAAATTAGAGACTACCGGCAAGGAAATGCT
GATGAATTTAAGCAAATTTCCCTTTCCGGAGATAATCAAACCACCCGTTT
TGCTGGATACTAAGTTGCCCAAAACCCTGCGGGTTAATCACTGGCCCTAT
ATTACACACAAAATTTTCGACTACGTAATGCCGGACATATATTTTCGGTC
CATGGAGTTCATGAAGAAACCCGTATGTGAGGGAGCCGTGGGTTATGATC
CTTTGTACTATGGCTCATCAATTTTGATCAAACCTCTGTGCAAGTACAGT
AAGCCACGCAATTTTTCACCCACATGGACCAATACTAGCTTGGTGTCCTG
GATAGATGGGCGTCGTTTTGCCAAGATGGTGAAACGTAATGACTCGCAGA
TGGGTAATGAGAAGCTACTTCGGTGGACTAAGGTTCGCCCGTTTTGGAGC
AATAAACTCCTGGCTGGACTTAGAAAGGACCCGGACGCTAAACTAATTGT
AAGGTGGAAGCGTCCCAGGACAAGATTTTCTTTTAATCCGGAATCCGATG
CGATGGACAAACAATGGGATATGCCCGAGGAGGACCCGTTGCCATCGGAT
GAGTTTTACGTAGAATATGTAATGAATGATGATCCCGAAACACAACGATC
ATGGAACTCCTCGTTGTCTGACGATTCTATGCCGGGAATAACTAAATCCC
AGTCTGATCTCAATCTCGAATATTTAAAGATAAGGCCGATATTAAGACGT
TGTCATAGTTCGAGCAGTCTTTTTGCAAGCTTTCTAGACCAT

BO28979.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG32720-RB 1011 CG32720-PB 1..1008 17..1024 5040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG32720-RB 1335 CG32720-RB 71..1078 17..1024 5040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7535882..7536889 1024..17 5040 100 Minus
Blast to na_te.dros performed 2014-11-26 16:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
transib2 2844 transib2 TRANSIB2 2844bp 2539..2571 165..197 120 84.8 Plus

BO28979.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:35:21 Download gff for BO28979.complete
Subject Subject Range Query Range Percent Splice Strand
CG32720-RB 1..1008 17..1026 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:25 Download gff for BO28979.complete
Subject Subject Range Query Range Percent Splice Strand
CG32720-RB 71..1078 17..1026 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:32 Download gff for BO28979.complete
Subject Subject Range Query Range Percent Splice Strand
CG32720-RB 71..1078 17..1026 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:32 Download gff for BO28979.complete
Subject Subject Range Query Range Percent Splice Strand
X 7535880..7536889 17..1026 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:25 Download gff for BO28979.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7429913..7430922 17..1026 99   Minus

BO28979.pep Sequence

Translation from 16 to 1042

> BO28979.pep
MGRSKVLRKKQSSKKRRHTIDQENTDDYYMTPEEVRQSVERWSFLWHCSD
SDSDSNSESESSSTSSLLQHDPSLYGDWRVRGEEFKLETTGKEMLMNLSK
FPFPEIIKPPVLLDTKLPKTLRVNHWPYITHKIFDYVMPDIYFRSMEFMK
KPVCEGAVGYDPLYYGSSILIKPLCKYSKPRNFSPTWTNTSLVSWIDGRR
FAKMVKRNDSQMGNEKLLRWTKVRPFWSNKLLAGLRKDPDAKLIVRWKRP
RTRFSFNPESDAMDKQWDMPEEDPLPSDEFYVEYVMNDDPETQRSWNSSL
SDDSMPGITKSQSDLNLEYLKIRPILRRCHSSSSLFASFLDH

BO28979.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG32720-PB 336 CG32720-PB 1..336 1..336 1815 100 Plus