BO28980.complete Sequence
1252 bp assembled on 2011-08-24
GenBank Submission: KX794084
> BO28980.complete
GAAGTTATCAGTCGACATGTTGTTGATGGAGCTCGTGATTTTCTTTGACT
GGCTGTTGATCGTCTCTGGTATGCCGAAGGTGAAGTTTGGCCTCCAAAAT
TTTACGGGTCGTGGTAAAGATTACCGCATCAAAGTGATTACTGGGATTCT
TATAATAGACAAGTACGGCTACTCAGTGGAGACGCACACGGTTCGCACTG
GAGATGGATACATTCTGGATATGTTTCGGATTCCCTCATCACCCAACTGC
AAGGAGGACGGTTTCAAGCCGTCTGTTCTTATCCAGCACGGACTGATCAG
CCTGGCCGATTCCTTCCTGGTGACGGGACCGAGGAGCGGACTTCCATTCA
TGCTGGCCGATCGCTGCTACGACGTGTGGCTGAGCAACAGCCGGGGAGTC
CGCTACTCGCAGCGCCACATCCGGCTGAAGGCTTCCCAGGATGCCTTCTG
GCGCTTTAGCTGGCACGAAATGGGAATGGAGGACCTGCCCGCCATGATCG
ACTACATCCTGTCCACGACAAACGAGGAAGCGTTGCACTTCGTTTGCCAT
TCTCAGGGATGCACCACCCTACTGGTTTTGCTCAGCATGAAGCCGGAGTA
TAACCGGATGATAAAGACGGCCAACATGATGGCCCCCGCCGTTTTCATGA
AGCACGCAAGGAACAAGCTAATGAAAATGTTTGGGAACATCATTATGAGC
ATGAAGGACAGTAGTTTTTTTGGCCCCTTAGATGCTATAAGATTCCTGCT
ATCCGTTTTTTGCAAATGCTCGAAGTTTAAAAAATTGTGCGCCTTTATGT
TCATATTGGCCAGTGAAGAACCAACATCGTATATGAACAATACCGCCATA
CCATTGATATTAGCAACGCATCCTGGTGCGATTTCCACTCGACAGCCAAA
GCACTTTCTTCAACTCCGGAAATCTGGAAAATTCCGTCCGTATGACTTCG
GAGTCATGAGAAATAAAAAACTATACAATCAGGACACGCCTCCCGATTAT
CCGTTGGAAAACGTCCGCCCTCAGTCGCCCATTCATATATACCACAGCCA
TGGTGACGACTTGGTGGCGCGCAAAGACATCCACATACTGATCAGCAAGT
TGGACAAGGCGGTGTTGCATGACGTTGTTTTTGAAAAATGGAGCCACTCG
GACTTTCTGTTCGCCAAATTAATCAAAAAAGTTGTTAATGAACCAATTAT
CAAAGTTATTGATCACTTTGAGAATAGACAGCAAGCAAGCTTTCTAGACC
AT
BO28980.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:25:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11600-RB | 1221 | CG11600-PB | 1..1218 | 17..1234 | 6090 | 100 | Plus |
| CG11598-RB | 1167 | CG11598-PB | 361..522 | 443..604 | 285 | 78.4 | Plus |
| CG18530-RA | 1167 | CG18530-PA | 360..520 | 445..605 | 265 | 77.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:25:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11600-RB | 1330 | CG11600-RB | 14..1231 | 17..1234 | 6090 | 100 | Plus |
| CG11598-RB | 1248 | CG11598-RB | 361..522 | 443..604 | 285 | 78.4 | Plus |
| CG18530-RA | 1188 | CG18530-RA | 363..523 | 445..605 | 265 | 77.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:25:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12636735..12637431 | 145..841 | 3485 | 100 | Plus |
| 3R | 32079331 | 3R | 12637485..12637877 | 842..1234 | 1965 | 100 | Plus |
| 3R | 32079331 | 3R | 12636553..12636681 | 17..145 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 12635332..12635493 | 443..604 | 285 | 78.4 | Plus |
| 3R | 32079331 | 3R | 12633781..12633941 | 445..605 | 265 | 77.6 | Plus |
| 3R | 32079331 | 3R | 12639039..12639190 | 449..600 | 220 | 76.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:25:23 has no hits.
BO28980.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:35:22 Download gff for
BO28980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11600-RB | 6..1218 | 22..1236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:35 Download gff for
BO28980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11600-RB | 19..1231 | 22..1236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:45 Download gff for
BO28980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11600-RB | 19..1231 | 22..1236 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:45 Download gff for
BO28980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12637485..12637877 | 842..1236 | 99 | | Plus |
| 3R | 12636558..12636681 | 22..145 | 100 | -> | Plus |
| 3R | 12636736..12637431 | 146..841 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:35 Download gff for
BO28980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8462280..8462403 | 22..145 | 100 | -> | Plus |
| arm_3R | 8462458..8463153 | 146..841 | 100 | -> | Plus |
| arm_3R | 8463207..8463599 | 842..1236 | 99 | | Plus |
BO28980.pep Sequence
Translation from 16 to 1252
> BO28980.pep
MLLMELVIFFDWLLIVSGMPKVKFGLQNFTGRGKDYRIKVITGILIIDKY
GYSVETHTVRTGDGYILDMFRIPSSPNCKEDGFKPSVLIQHGLISLADSF
LVTGPRSGLPFMLADRCYDVWLSNSRGVRYSQRHIRLKASQDAFWRFSWH
EMGMEDLPAMIDYILSTTNEEALHFVCHSQGCTTLLVLLSMKPEYNRMIK
TANMMAPAVFMKHARNKLMKMFGNIIMSMKDSSFFGPLDAIRFLLSVFCK
CSKFKKLCAFMFILASEEPTSYMNNTAIPLILATHPGAISTRQPKHFLQL
RKSGKFRPYDFGVMRNKKLYNQDTPPDYPLENVRPQSPIHIYHSHGDDLV
ARKDIHILISKLDKAVLHDVVFEKWSHSDFLFAKLIKKVVNEPIIKVIDH
FENRQQASFLDH
BO28980.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:23:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11600-PB | 406 | CG11600-PB | 1..406 | 1..406 | 2147 | 100 | Plus |
| CG11608-PB | 430 | CG11608-PB | 8..407 | 1..402 | 1023 | 48.5 | Plus |
| CG11598-PB | 388 | CG11598-PB | 24..388 | 46..410 | 987 | 49 | Plus |
| CG18530-PA | 389 | CG18530-PA | 19..380 | 41..402 | 977 | 49.4 | Plus |
| mag-PA | 399 | CG5932-PA | 36..399 | 47..404 | 681 | 38.3 | Plus |
