Clone BO28987 Report

Search the DGRC for BO28987

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:289
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG34029-RA
Protein status:BO28987.pep: Imported from assembly
Sequenced Size:376

Clone Sequence Records

BO28987.complete Sequence

376 bp assembled on 2011-08-24

GenBank Submission: KX799927

> BO28987.complete
GAAGTTATCAGTCGACATGGAATCCCCGGACAACAGGCTGTACATGTGCA
CCGCGTGCTTTAAAAGGTTTCTTTGGAGCGAACTGTCGAGGAAGGAGCTC
CGCTGCGCTCAGTGCCGTCTGTCAACCAAAATCTGTGTCATTTGCGATAA
GAAGTTTGAGCCGCGCGAAATGTCGCAAGTTTACTGCAAGCAATGCAATT
TCTACATCGAGAGACATGCCGTAGTCAAGCCCCCTCCCTTGGGTGTACAA
ATCGGAAAACCAGCGGAGATGACCAGTGGGCCAGGTACGGAAGGATCTTC
GATCACAGAGCGCTGGAAGGAGATTAAGGCCGCCGCTGGAATCGTGGATG
ACTTTGATGCAAGCTTTCTAGACCAT

BO28987.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG34029-RA 345 CG34029-PA 1..342 17..358 1710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG34029-RA 460 CG34029-RA 52..396 14..358 1725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:26:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21970831..21971175 358..14 1725 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:26:59 has no hits.

BO28987.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:35:24 Download gff for BO28987.complete
Subject Subject Range Query Range Percent Splice Strand
CG34029-RA 17..358 17..360 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:13 Download gff for BO28987.complete
Subject Subject Range Query Range Percent Splice Strand
CG34029-RA 50..391 17..360 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:25 Download gff for BO28987.complete
Subject Subject Range Query Range Percent Splice Strand
CG34029-RA 55..396 17..360 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:25 Download gff for BO28987.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21970828..21971172 17..360 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:13 Download gff for BO28987.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17858333..17858677 17..360 99   Minus

BO28987.pep Sequence

Translation from 16 to 376

> BO28987.pep
MESPDNRLYMCTACFKRFLWSELSRKELRCAQCRLSTKICVICDKKFEPR
EMSQVYCKQCNFYIERHAVVKPPPLGVQIGKPAEMTSGPGTEGSSITERW
KEIKAAAGIVDDFDASFLDH

BO28987.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG34029-PA 114 CG34029-PA 1..114 1..114 621 100 Plus