Clone BO28988 Report

Search the DGRC for BO28988

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:289
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG43111-RA
Protein status:BO28988.pep: Imported from assembly
Sequenced Size:477

Clone Sequence Records

BO28988.complete Sequence

477 bp assembled on 2011-08-24

> BO28988.complete
GAAGTTATCAGTCGACATGAATCATCTGTTCGTGTTAACTTTTATTCTGC
TTTTTGCCTTTGCCTTGGGATCCGAAGGTGAATTGACCGAAATGTGCCAA
CCACAATTAAACAGAAGAGACCTATTCGACATAGCCGTGTTGGCCGCCAT
AAAGGTTCTCATCCGTCAGATTGAGAGCTACAACGAGGATCGGCCTATCT
CTTCAAGCCTGATGGTTCACATTACGACTATGGTCTCCAAGTACATCCTG
ACCGGTAAGAGCGTAAAGTTCATCCTTCGGCTGCTCTATGTGGCATGCCG
TATGAACAAACCGCTGACACAAGAAAATAAAAAACAAGCTCCAGTCCGCA
CAGCATTCTTATGCTTGTTGGAATTGGGCAAAGAAAAGTGCTATACATAC
AAGGAAAAGGCGGAAGGAGACTTCTCTGTGGAGTTGCAAGCAAGCTTTCT
AGACCATTCGTTTGGCCCTTTAACGCG

BO28988.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:27:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG43111-RA 426 CG43111-PA 1..423 17..439 2115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG43111-RA 553 CG43111-RA 41..463 17..439 2115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19552162..19552582 19..439 2105 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:27:17 has no hits.

BO28988.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:35:25 Download gff for BO28988.complete
Subject Subject Range Query Range Percent Splice Strand
CG43111-RA 41..469 17..447 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:19 Download gff for BO28988.complete
Subject Subject Range Query Range Percent Splice Strand
CG43111-RA 41..469 17..447 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:30 Download gff for BO28988.complete
Subject Subject Range Query Range Percent Splice Strand
CG43111-RA 41..469 17..447 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:30 Download gff for BO28988.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19552161..19552588 17..447 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:19 Download gff for BO28988.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15439666..15440093 17..447 98   Plus

BO28988.pep Sequence

Translation from 16 to 475

> BO28988.pep
MNHLFVLTFILLFAFALGSEGELTEMCQPQLNRRDLFDIAVLAAIKVLIR
QIESYNEDRPISSSLMVHITTMVSKYILTGKSVKFILRLLYVACRMNKPL
TQENKKQAPVRTAFLCLLELGKEKCYTYKEKAEGDFSVELQASFLDHSFG
PLT

BO28988.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG43111-PA 141 CG43111-PA 1..141 1..141 711 100 Plus