BO28989.complete Sequence
673 bp assembled on 2011-08-24
GenBank Submission: KX796221
> BO28989.complete
GAAGTTATCAGTCGACATGGACTGCGCACCACTGAACTTGGCTCATTTCC
ACGAGCGAAGGTCGGAGCGATTTATACGCAATCACCGCTATGAGGAGGCC
ATTAAAGCGCTGGAAACATCCCTAATCTACATGCAGGATGCCCAAAAACG
GGTGGCTCTGCCCAAATCCAAGGAAGTTCTGGACACATTGACCCTCGATT
TTCAGCGCAAACTGCGTCAAATTGAGATGCGAAAGACGCAGCATGGTCTG
AACAAGCTGAAGGATTATGCTCCCTTGAAGGAAACCAGTCCCATGCTGCC
CCTGCGACCAGAAGCCGGAGCAAGTGGAGGCGCAGGAGGATCCGCTCAGT
CGGTGGCCAAGGCAATCGACAAAACAGTGCAGGACTTCGATGCCAAGTTC
ACCTCCTCCTTGGTGGCAAAGGCCTCTAGCACACTGGCCCATTCGGAGCC
CCATATGGAGACGCTGAAGAAGAGCGATTCTGCCCAGGAGGAGCAGGAAC
ACGATACTTGCGATCAGCGGCTGGCGGGCAGTGGAGACCTGGACCTGCCA
TCCTTGGCGCCCTTGGAGTTGCCCTCCTTCGATTACAGCCTGTTCACCAG
CTCCTCGGCTCCTTCGTTGGCCAGCTATGCCGGCATGGCTGAGAGCTTCC
AGAAAGCAAGCTTTCTAGACCAT
BO28989.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:27:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42554-RA | 642 | CG42554-PA | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:27:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42554-RA | 1023 | CG42554-RA | 163..803 | 15..655 | 3205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:27:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 835935..836550 | 40..655 | 3080 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:27:37 has no hits.
BO28989.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:35:26 Download gff for
BO28989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42554-RA | 41..679 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:26 Download gff for
BO28989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42554-RA | 165..803 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:38 Download gff for
BO28989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42554-RA | 165..803 | 17..657 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:38 Download gff for
BO28989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 835847..835870 | 17..40 | 100 | -> | Plus |
3L | 835936..836550 | 41..657 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:26 Download gff for
BO28989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 835847..835870 | 17..40 | 100 | -> | Plus |
arm_3L | 835936..836550 | 41..657 | 99 | | Plus |
BO28989.pep Sequence
Translation from 16 to 673
> BO28989.pep
MDCAPLNLAHFHERRSERFIRNHRYEEAIKALETSLIYMQDAQKRVALPK
SKEVLDTLTLDFQRKLRQIEMRKTQHGLNKLKDYAPLKETSPMLPLRPEA
GASGGAGGSAQSVAKAIDKTVQDFDAKFTSSLVAKASSTLAHSEPHMETL
KKSDSAQEEQEHDTCDQRLAGSGDLDLPSLAPLELPSFDYSLFTSSSAPS
LASYAGMAESFQKASFLDH
BO28989.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:23:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42554-PA | 213 | CG42554-PA | 1..213 | 1..213 | 1077 | 100 | Plus |